genome.fa.s7886.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007886.1 Hibiscus syriacus cultivar Beakdansim tig00110266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1254954

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
951737--951787	22	2.3	22	89	0	75	23	41	11	23	1.87
952047--952090	19	2.2	20	88	4	63	45	20	20	13	1.85
955522--955561	14	2.9	14	80	0	53	30	0	17	52	1.45
955471--955611	66	2.2	66	83	8	177	31	1	17	50	1.54
955670--955707	20	1.9	20	100	0	76	42	26	18	13	1.87
955728--955800	34	2.1	34	85	9	96	15	21	23	39	1.91
955978--956064	39	2.2	39	91	0	147	17	13	19	49	1.79
956368--956406	6	6.5	6	87	0	51	48	7	10	33	1.66
956359--956418	30	2.0	30	90	0	93	46	11	8	33	1.70
956917--956978	20	3.1	20	78	0	79	33	20	20	24	1.97
956982--957027	20	2.3	20	92	0	74	15	21	21	41	1.90
957002--957090	34	2.6	34	78	7	108	21	19	19	40	1.92
957385--957420	18	2.0	18	94	0	63	16	2	25	55	1.55
959646--959699	24	2.2	24	90	0	81	40	20	16	22	1.91
959825--959858	12	2.8	12	90	0	50	14	0	29	55	1.40
960616--960734	20	5.8	22	72	18	82	23	15	26	34	1.95
961880--962051	87	2.0	86	97	1	326	22	18	19	39	1.92
962187--962760	226	2.6	225	88	3	843	38	14	16	31	1.88
964284--964380	41	2.4	41	80	11	119	26	40	14	18	1.89
970461--970610	40	3.8	40	90	0	237	35	25	15	24	1.94
970461--970629	40	4.2	40	87	3	225	34	24	14	25	1.94
971483--971540	29	2.0	30	83	10	75	39	24	5	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
971481--971547	30	2.2	30	81	5	82	40	22	4	32	1.74
979572--979618	6	7.7	6	83	9	60	55	0	29	14	1.40
979572--979620	19	2.6	20	87	9	68	55	0	30	14	1.40
999854--999897	20	2.3	19	84	7	54	43	9	25	22	1.82
1001644--1001679	18	2.0	18	94	0	63	33	19	13	33	1.91
1002466--1002512	22	2.1	23	88	4	69	23	12	25	38	1.90
1010122--1011055	467	2.0	468	98	1	1802	46	8	13	31	1.74
1013661--1013772	42	2.7	42	85	0	170	22	16	24	36	1.94
1013659--1013779	21	5.8	21	81	0	152	22	17	25	34	1.95
1014648--1014681	14	2.3	15	85	10	52	47	0	0	52	1.00
1014691--1014741	24	2.0	27	85	11	72	49	0	3	47	1.20
1016086--1016133	18	2.7	18	93	0	69	50	12	12	25	1.75
1016094--1016133	18	2.2	18	100	0	80	50	12	10	27	1.72
1019978--1020282	159	1.9	159	97	1	585	28	19	24	27	1.98
1021464--1021517	21	2.6	21	82	2	65	40	18	24	16	1.90
1021506--1021600	20	4.7	20	77	2	82	33	24	18	23	1.97
1021503--1021580	41	1.9	41	83	0	102	38	21	17	21	1.93
1021780--1021823	22	2.0	22	90	0	70	22	45	13	18	1.84
1022057--1022109	20	2.7	20	79	2	63	15	15	18	50	1.77
1023430--1023474	18	2.5	18	88	0	72	26	44	15	13	1.83
1023967--1024022	20	2.8	20	78	2	60	39	19	23	17	1.92
1024011--1024068	14	3.9	14	79	16	71	48	24	17	10	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023995--1024085	32	2.8	33	94	3	166	47	21	18	12	1.81
1024134--1024200	19	3.5	19	81	4	80	16	22	23	37	1.94
1024146--1024200	20	2.8	19	86	5	74	18	23	23	34	1.96
1026045--1026080	14	2.6	14	90	0	54	30	0	22	47	1.52
1026196--1026282	19	4.8	19	89	10	139	47	17	21	13	1.82
1026167--1026282	33	3.4	33	84	11	151	43	19	22	13	1.86
1026301--1026358	20	2.9	20	92	0	89	17	20	22	39	1.92
1027419--1027472	24	2.2	24	90	0	81	24	16	20	38	1.92
1027647--1027671	12	2.1	12	100	0	50	72	0	28	0	0.86
1028414--1028569	31	5.0	31	91	1	242	36	22	20	20	1.95
1028785--1028830	22	2.0	22	87	8	65	34	21	0	43	1.53
1029461--1029505	21	2.1	21	87	0	63	15	24	28	31	1.96
1032474--1032629	31	5.0	31	91	1	242	36	22	20	20	1.95
1032819--1032865	23	2.0	24	91	4	78	34	21	0	44	1.52
1033495--1033539	21	2.1	21	87	0	63	15	24	28	31	1.96
1036502--1036628	33	3.8	33	86	4	184	44	19	21	14	1.87
1036503--1036635	66	2.0	66	94	0	230	42	19	21	16	1.89
1036628--1036669	19	2.2	19	86	0	57	19	19	21	40	1.92
1036777--1036813	14	2.6	14	91	0	65	45	24	0	29	1.53
1038208--1038291	42	2.0	42	83	0	105	23	16	38	21	1.93
1040319--1040423	39	3.0	33	81	13	111	43	22	22	10	1.84
1040294--1040445	19	8.1	19	80	11	161	45	19	22	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040356--1040445	39	2.3	38	92	1	144	46	21	20	12	1.82
1040441--1040507	19	3.5	18	82	11	80	10	16	25	47	1.78
1041025--1041138	20	5.7	20	84	6	122	23	19	25	31	1.98
1041025--1041141	61	1.9	61	87	0	171	23	18	24	33	1.97
1041025--1041159	61	2.2	61	82	2	164	22	20	24	32	1.98
1041209--1041249	21	2.0	21	85	0	55	34	31	17	17	1.93
1042876--1042925	23	2.2	23	96	0	91	24	10	26	40	1.86
1045536--1045579	22	2.0	22	90	0	70	40	4	9	45	1.56
1046204--1046240	7	5.7	7	81	18	53	78	0	8	13	0.96
1046203--1046242	12	3.4	11	83	16	53	80	0	7	12	0.91
1046204--1046240	13	2.9	13	96	4	67	78	0	8	13	0.96
1055676--1055719	21	2.1	21	95	0	79	52	22	4	20	1.65
1060878--1060991	20	5.7	20	81	6	104	32	25	17	24	1.97
1060875--1060991	61	1.9	61	83	0	153	34	24	17	23	1.96
1061510--1061590	19	4.5	19	70	16	55	46	23	16	13	1.82
1061586--1061736	19	8.1	19	83	10	168	12	22	21	43	1.86
1061567--1061654	38	2.3	38	82	3	97	18	22	20	38	1.93
1063738--1063860	42	2.9	42	80	2	122	22	36	17	22	1.95
1063794--1063860	21	3.2	21	66	6	55	23	35	20	19	1.95
1065217--1065252	14	2.6	14	95	0	63	30	0	25	44	1.54
1065350--1065442	19	5.4	19	66	23	80	17	20	19	43	1.89
1065351--1065441	33	2.7	34	89	5	141	16	20	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1066577--1066643	19	3.5	19	83	4	89	37	23	23	14	1.93
1066632--1066694	14	4.3	14	79	16	74	50	25	15	7	1.71
1066616--1066690	32	2.3	33	95	2	134	45	25	18	10	1.82
1066701--1066782	18	4.6	19	79	14	104	13	20	20	45	1.85
1066767--1066821	20	2.8	19	83	8	65	16	23	23	36	1.94
1066701--1066802	33	2.8	34	76	23	102	13	22	21	42	1.88
1067303--1067347	18	2.5	18	88	0	72	15	13	42	28	1.85
1068666--1068703	20	1.9	20	88	0	58	50	21	15	13	1.78
1068967--1069010	22	2.0	22	95	0	79	18	15	45	20	1.85
1069198--1069291	20	4.7	20	80	2	89	23	18	24	34	1.96
1069178--1069292	20	5.7	20	78	5	88	23	17	23	35	1.95
1069281--1069356	21	3.7	21	78	3	91	17	25	17	40	1.90
1069220--1069354	41	3.3	41	81	4	130	20	21	20	38	1.94
1069300--1069364	20	3.2	20	76	4	76	18	23	15	43	1.88
1069281--1069373	41	2.3	41	96	0	168	19	24	16	39	1.91
1075479--1075522	19	2.2	20	84	4	54	38	13	15	31	1.87
1076722--1076764	18	2.2	20	84	8	54	34	4	9	51	1.55
1081930--1082333	191	2.1	191	86	3	560	45	9	6	39	1.61
1083915--1083946	2	16.0	2	100	0	64	50	0	0	50	1.00
1084642--1084777	61	2.3	59	89	2	200	30	19	8	42	1.80
1084762--1084831	31	2.3	31	94	0	122	24	7	11	57	1.59
1088319--1088357	19	2.1	19	100	0	78	53	5	10	30	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096209--1096244	18	2.0	18	94	0	63	16	47	22	13	1.82
1096252--1096348	29	3.3	29	82	1	95	27	8	23	40	1.83
1096285--1096355	30	2.4	29	88	2	97	32	7	21	39	1.80
1098485--1098557	20	3.7	19	78	8	67	39	13	16	30	1.87
1101815--1101858	19	2.2	20	88	4	63	38	15	11	34	1.84
1112234--1112276	22	1.9	23	81	13	54	39	2	4	53	1.34
1119614--1119664	22	2.4	21	74	12	50	17	9	31	41	1.82
1119512--1119690	21	8.5	21	77	4	119	21	13	25	40	1.89
1119911--1119966	23	2.4	23	87	0	76	37	0	25	37	1.56
1119933--1119979	23	2.0	23	83	0	58	36	4	21	38	1.73

Tables:   1   2   3   4   5   6   7