genome.fa.s7924.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007924.1 Hibiscus syriacus cultivar Beakdansim tig00110330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1741266

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2138--2200	21	2.9	21	83	9	74	17	25	36	20	1.94
7946--8144	76	2.6	78	87	5	275	19	24	32	23	1.97
16554--16587	17	1.9	18	88	5	52	47	0	0	52	1.00
34271--34330	25	2.5	23	77	17	59	23	6	25	45	1.77
34308--34383	27	2.8	28	80	6	93	17	9	19	53	1.70
39436--39554	35	3.3	36	89	5	170	43	19	4	32	1.70
39483--39546	20	3.4	20	66	29	59	45	18	4	31	1.70
47621--47716	42	2.3	42	98	0	183	25	27	16	31	1.97
65917--65949	15	2.2	15	100	0	66	33	33	18	15	1.92
66061--66129	24	2.8	26	83	12	85	31	24	5	37	1.79
66094--66129	12	3.0	12	91	0	63	36	25	5	33	1.79
66437--66657	64	3.5	63	81	4	221	26	19	19	34	1.96
72853--72885	15	2.2	15	94	0	57	33	30	18	18	1.94
72997--73065	24	2.8	26	83	12	85	31	24	5	37	1.79
73030--73065	12	3.0	12	91	0	63	36	25	5	33	1.79
73377--73597	64	3.5	64	81	3	196	28	18	19	34	1.95
75831--75888	27	2.1	27	87	0	80	58	0	1	39	1.08
75852--75922	25	2.8	26	77	16	76	49	1	5	43	1.35
75920--75956	15	2.3	16	90	9	58	48	0	0	51	1.00
79408--79486	21	3.8	21	64	12	54	24	21	29	25	1.99
81029--81084	24	2.3	23	80	14	60	67	5	0	26	1.11
94113--94139	14	1.9	14	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95645--95693	18	2.7	18	79	20	57	77	2	2	18	0.96
96003--96065	31	2.0	32	81	9	76	55	1	7	34	1.39
96027--96065	16	2.4	16	100	0	78	56	0	12	30	1.37
96695--96753	24	2.6	23	78	5	66	15	22	10	52	1.72
97806--98807	84	12.2	82	78	6	857	25	18	24	31	1.98
97782--98725	495	1.9	493	82	5	1172	25	19	24	31	1.98
105723--105750	5	5.6	5	100	0	56	82	0	0	17	0.68
106086--106124	16	2.4	16	100	0	78	56	0	12	30	1.37
107869--108868	84	12.2	83	76	5	809	24	18	25	31	1.98
107868--108792	165	5.6	162	84	3	1003	24	19	25	31	1.98
114119--114154	4	8.5	4	88	11	54	72	2	0	25	0.98
114486--114524	16	2.4	16	100	0	78	56	0	12	30	1.37
115155--115210	24	2.4	23	82	5	69	12	19	12	55	1.68
115166--115209	12	3.7	12	79	11	54	11	15	13	59	1.62
124005--124073	37	1.9	37	88	5	106	40	5	8	44	1.59
125912--125937	5	5.2	5	100	0	52	38	42	0	19	1.51
129915--129963	19	2.6	19	83	0	62	59	6	28	6	1.46
132478--132570	46	2.0	46	100	0	186	23	8	38	29	1.84
140131--140177	16	2.9	16	82	14	60	14	4	0	80	0.85
140130--140179	15	3.1	15	83	11	64	14	4	0	82	0.82
141559--141724	3	55.3	3	97	0	188	67	9	0	23	1.19
147217--147402	100	1.9	100	96	0	345	46	15	5	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150705--150742	3	12.7	3	100	0	76	65	0	34	0	0.93
154373--154426	24	2.2	24	93	0	90	18	40	1	38	1.61
155843--155877	11	3.2	11	91	0	52	37	0	20	42	1.52
158197--158446	115	2.2	116	85	5	330	22	22	16	38	1.93
158549--159081	139	3.8	139	93	0	850	24	20	18	36	1.95
159655--159700	18	2.6	18	89	6	67	19	21	10	47	1.80
159842--160014	54	3.2	53	81	4	186	45	18	9	27	1.80
161990--162041	18	2.9	18	77	11	54	9	15	0	75	1.05
162018--162053	13	2.8	13	91	4	56	5	16	0	77	0.94
162031--162088	20	3.0	20	78	12	66	1	13	5	79	0.98
162062--162106	15	2.9	15	78	15	56	0	6	11	82	0.84
163476--163526	21	2.3	23	80	9	63	60	7	15	15	1.56
165148--165185	11	3.5	11	82	7	51	36	0	21	42	1.53
169371--169399	14	2.1	14	100	0	58	6	24	20	48	1.74
169933--170127	105	1.9	105	93	0	336	28	24	25	21	1.99
171327--171397	23	2.9	25	81	14	85	50	0	4	45	1.21
171325--171386	23	2.6	24	87	5	90	51	0	4	43	1.23
171325--171407	25	3.4	25	79	12	93	50	0	3	45	1.19
177809--177885	31	2.4	32	86	4	111	40	28	6	24	1.80
180655--180684	15	2.0	15	93	0	51	60	0	16	23	1.36
180781--180848	28	2.4	28	76	11	68	77	1	7	13	1.03
180823--180937	13	9.1	13	66	24	50	73	1	2	22	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180823--180918	27	3.2	28	74	22	81	75	1	2	21	0.98
180835--180889	22	2.5	22	88	8	85	78	0	1	20	0.85
180771--180894	9	13.6	9	71	12	74	78	0	4	16	0.97
180964--181020	20	2.8	21	75	24	59	64	5	7	22	1.38
181288--181378	37	2.5	37	85	0	110	29	14	13	42	1.83
181935--182592	109	6.3	103	81	8	547	20	20	26	32	1.97
182405--182590	98	1.9	98	89	0	291	18	22	25	33	1.96
182860--182926	29	2.3	28	76	7	71	28	16	10	44	1.80
183146--183528	36	10.9	36	74	13	298	39	12	20	27	1.89
183180--183363	102	1.8	101	86	1	269	40	13	17	28	1.87
183146--183400	138	1.8	138	87	1	377	40	13	18	27	1.88
183146--183528	174	2.2	174	83	2	482	39	12	20	27	1.89
184460--184515	22	2.5	22	88	0	76	32	12	23	32	1.92
185145--185224	23	3.5	22	74	12	72	1	13	7	77	1.04
186331--186369	8	5.0	8	84	6	53	58	12	17	10	1.61
186331--186369	15	2.5	15	87	4	51	58	12	17	10	1.61
187693--187734	15	2.6	17	77	14	52	71	0	16	11	1.14
188798--188827	15	2.0	15	100	0	60	60	0	20	20	1.37
188801--188835	15	2.3	15	90	0	52	65	0	17	17	1.27
188907--189022	6	18.7	6	70	19	60	76	0	5	17	1.01
188912--188978	16	4.4	16	81	7	68	79	1	7	11	1.00
188912--189023	8	15.4	7	73	21	56	76	0	5	16	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188973--189019	21	2.3	20	85	10	60	72	0	2	25	0.96
188967--189052	37	2.4	37	86	3	122	69	0	2	27	1.00
188957--189052	29	3.3	28	77	15	88	70	1	2	26	1.04
188957--189039	29	2.8	30	77	15	93	71	1	2	25	1.06
189096--189156	23	2.8	21	74	16	54	67	4	6	21	1.33
189426--189530	37	2.8	37	78	2	113	30	11	14	43	1.80
190844--190940	37	2.6	37	86	0	122	42	13	11	32	1.80
191477--191505	2	14.5	2	100	0	58	48	0	0	51	1.00
191799--191828	4	7.2	4	92	7	51	23	3	0	73	0.98
191799--191868	13	5.4	13	73	13	54	20	8	0	71	1.11
194691--194729	14	2.8	14	96	0	69	56	2	0	41	1.13
196132--196176	8	5.6	8	89	10	56	13	17	13	55	1.69
197321--197393	8	9.1	8	76	16	53	79	5	15	0	0.90
197324--197393	17	4.1	17	78	12	81	80	5	14	0	0.89
197321--197402	23	3.3	25	75	17	82	79	6	14	0	0.92
197343--197416	22	3.4	21	74	9	67	79	5	13	1	0.96
201071--201168	44	2.1	47	87	7	139	26	11	22	39	1.87
210852--210903	11	4.5	11	79	11	50	78	1	15	3	0.98
210828--210902	24	3.4	22	71	12	55	72	1	20	6	1.15
210864--210925	24	2.6	24	87	12	92	79	0	14	6	0.93
210872--210936	16	4.3	15	72	14	53	78	0	15	6	0.94
210865--210925	25	2.6	23	87	12	88	78	0	14	6	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
212075--212649	55	10.6	55	87	5	637	28	16	25	29	1.97
215945--215980	18	2.0	18	88	0	54	22	2	27	47	1.65
216355--217835	106	14.0	106	89	1	2111	34	24	17	23	1.96
218566--218670	37	2.8	37	85	0	138	40	16	14	29	1.87
219205--219236	2	16.5	2	93	6	57	50	0	0	50	1.00
219206--219235	15	2.0	15	100	0	60	53	0	0	46	1.00
219210--219243	15	2.3	15	89	0	50	52	0	0	47	1.00
219488--219513	2	13.0	2	100	0	52	50	0	0	50	1.00
219528--219563	10	3.6	10	88	0	54	19	2	2	75	1.06
222127--222178	26	2.0	26	100	0	104	30	3	3	61	1.32

Tables:   1   2   3   4   5   6   7