genome.fa.s7924.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007924.1 Hibiscus syriacus cultivar Beakdansim tig00110330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1741266

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1062336--1062416	32	2.6	30	72	25	69	27	13	23	35	1.92
1064515--1064581	27	2.5	27	90	0	98	14	26	40	17	1.89
1068422--1068461	15	2.6	16	75	25	50	52	2	0	45	1.14
1069749--1069782	11	3.2	10	91	8	50	44	2	0	52	1.16
1070995--1071130	73	1.9	73	88	0	209	43	9	14	32	1.78
1071609--1071634	2	13.0	2	100	0	52	50	50	0	0	1.00
1081980--1082140	21	7.7	21	88	4	209	42	21	20	15	1.89
1084692--1084748	30	1.9	30	82	7	71	73	0	21	5	1.02
1087377--1087473	42	2.3	42	77	7	99	26	23	21	27	1.99
1087582--1087661	42	1.9	42	82	5	99	28	22	20	28	1.98
1087792--1087893	42	2.5	41	83	3	123	25	25	22	26	2.00
1088219--1088334	42	2.8	41	79	6	117	26	25	20	26	1.99
1086964--1088560	205	7.5	214	93	2	2599	32	16	20	30	1.95
1086969--1088560	428	3.8	428	92	3	2591	32	16	20	30	1.95
1088433--1088531	42	2.4	41	81	3	108	28	23	21	27	1.99
1097218--1097253	13	2.8	13	91	8	56	27	8	33	30	1.86
1098749--1098797	23	2.1	23	85	14	66	46	2	2	48	1.25
1100001--1100040	16	2.5	16	91	0	62	75	0	25	0	0.81
1100001--1100040	19	2.1	19	90	0	62	75	0	25	0	0.81
1102464--1102505	16	2.7	16	88	3	59	69	2	2	26	1.13
1102622--1102697	29	2.6	29	87	4	100	43	9	10	36	1.71
1102650--1102691	15	2.9	15	75	3	50	40	9	9	40	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1103904--1103933	15	1.9	16	93	6	53	83	3	0	13	0.77
1113055--1113184	3	43.3	3	100	0	260	33	0	66	0	0.92
1113404--1113468	3	21.7	3	100	0	130	67	0	32	0	0.91
1113876--1114038	60	2.7	61	77	11	156	28	20	7	43	1.78
1127855--1127923	34	2.0	34	85	0	93	39	10	8	42	1.70
1128015--1128040	13	2.0	13	100	0	52	30	23	15	30	1.95
1128844--1128895	20	2.6	20	93	0	86	53	17	17	11	1.72
1128888--1128998	20	5.4	20	81	6	132	36	18	26	18	1.94
1129082--1129156	6	12.5	6	100	0	150	33	50	16	0	1.45
1129836--1129860	6	4.2	6	100	0	50	0	16	48	36	1.46
1129946--1130016	21	3.4	21	66	11	56	35	29	16	18	1.93
1130011--1130066	22	2.6	22	91	5	89	17	19	28	33	1.95
1130011--1130113	20	5.0	22	77	15	71	16	17	26	39	1.90
1136054--1137936	941	2.0	941	100	0	3766	32	22	16	28	1.95
1138195--1138327	54	2.5	55	79	9	141	43	9	12	33	1.76
1141954--1141988	18	1.9	19	88	11	56	60	0	5	34	1.21
1148938--1149068	41	3.1	40	82	7	145	29	17	3	49	1.64
1150362--1150395	6	5.5	6	96	3	59	70	0	14	14	1.17
1153289--1153361	34	2.1	34	100	0	146	24	13	34	27	1.93
1157789--1157833	23	2.0	23	100	0	90	31	8	8	51	1.64
1170563--1170625	25	2.4	26	81	7	74	58	6	4	30	1.43
1179888--1179931	3	14.7	3	100	0	88	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181449--1181499	24	2.1	24	82	10	59	35	0	0	64	0.94
1181440--1181507	25	2.6	26	79	11	77	35	0	0	64	0.94
1202674--1202706	16	2.1	16	94	0	57	39	3	0	57	1.14
1202683--1202733	23	2.1	25	85	7	70	37	5	3	52	1.44
1202927--1203069	73	2.0	73	86	5	200	41	9	6	41	1.65
1213292--1213491	104	1.9	104	96	0	373	32	15	15	37	1.88
1217430--1217486	24	2.4	24	100	0	114	38	10	15	35	1.82
1219322--1219700	187	2.0	185	88	1	569	32	13	19	34	1.90
1221127--1221220	27	3.2	30	64	11	77	52	12	10	24	1.71
1221097--1221220	58	2.1	61	90	4	200	53	13	8	24	1.68
1222268--1222337	33	2.1	33	89	5	106	25	22	41	10	1.85
1222341--1222425	29	2.9	29	89	0	134	21	29	35	14	1.92
1223357--1223576	113	2.0	112	86	4	309	36	16	13	33	1.88
1227579--1227649	35	2.0	35	94	0	124	52	12	11	23	1.72
1230414--1230468	21	2.6	21	77	8	58	34	21	20	23	1.97
1230456--1230684	20	11.4	20	80	5	221	37	24	17	20	1.93
1231598--1231622	12	2.1	12	100	0	50	72	0	28	0	0.86
1233921--1234154	72	3.3	71	80	8	275	47	17	21	14	1.83
1233907--1234176	53	5.1	52	88	8	397	46	17	22	13	1.83
1233888--1234181	72	4.2	69	77	15	273	45	18	22	14	1.84
1233907--1234173	105	2.5	105	89	7	402	46	17	22	13	1.83
1234153--1234268	53	2.2	52	86	3	160	18	23	18	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1234191--1234278	19	4.8	19	82	14	123	13	22	15	47	1.81
1234369--1234405	14	2.6	14	91	0	65	45	21	0	32	1.52
1236333--1236470	19	7.5	19	79	8	151	46	22	20	10	1.81
1236347--1236448	33	2.9	35	88	7	136	47	22	20	9	1.79
1236366--1236465	52	1.9	52	91	0	164	48	22	20	10	1.79
1236482--1236540	14	3.9	14	76	20	64	6	16	28	47	1.72
1236466--1236589	33	3.7	33	91	1	185	8	17	27	45	1.78
1236466--1236557	19	5.4	18	72	24	83	7	17	28	46	1.75
1236515--1236571	14	3.7	14	72	20	51	8	22	24	43	1.81
1236637--1236909	93	3.1	87	89	7	324	44	19	13	23	1.85
1236687--1236909	93	2.4	93	98	0	428	44	18	13	22	1.85
1238596--1238659	20	3.2	20	82	4	92	46	15	25	12	1.81
1238594--1238658	21	3.1	21	82	4	96	47	15	26	10	1.78
1239056--1239247	20	9.6	20	86	4	253	19	19	27	34	1.96
1241085--1241170	42	2.1	40	89	4	127	26	11	11	50	1.73
1243205--1243320	40	2.9	40	89	0	169	35	16	16	31	1.91
1243217--1243320	20	5.2	20	91	0	163	34	17	17	30	1.93
1243346--1243445	21	4.8	21	89	0	137	26	21	26	27	1.99
1243812--1243893	34	2.4	34	93	0	137	31	10	30	26	1.91
1243812--1243916	34	3.1	34	87	4	124	33	12	28	25	1.92
1255003--1255094	46	2.0	48	89	4	143	44	8	4	42	1.55
1255024--1255094	24	3.0	24	89	6	119	43	8	2	45	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1256916--1256957	19	2.2	20	86	4	59	16	14	21	47	1.82
1262183--1262217	9	3.8	9	92	3	52	77	5	0	17	0.96
1262183--1262232	18	2.7	18	84	3	55	74	8	2	16	1.15
1264670--1264715	23	2.0	23	86	0	65	30	26	23	19	1.98
1265334--1265491	63	2.5	64	82	5	169	25	17	20	35	1.95
1272482--1273472	331	3.0	331	98	0	1896	32	22	6	39	1.79
1278477--1278549	32	2.3	32	97	0	137	42	1	4	52	1.29
1280568--1280814	132	1.8	135	86	5	365	44	21	18	15	1.86
1280748--1281012	54	4.9	54	86	2	311	42	24	23	10	1.85
1284270--1284310	21	2.0	20	85	4	55	31	7	2	58	1.38
1284906--1284942	15	2.5	15	95	0	65	8	70	16	5	1.30
1290960--1291027	21	3.2	21	70	15	68	23	19	26	30	1.98
1290960--1291132	41	4.2	42	92	3	278	23	20	24	31	1.98
1291039--1291109	21	3.4	21	67	18	67	19	21	29	29	1.98
1291996--1292186	41	4.6	42	92	3	298	32	27	19	19	1.97
1291992--1292149	21	7.6	21	64	18	89	31	28	21	18	1.97
1292340--1292369	3	10.0	3	100	0	60	66	0	0	33	0.92
1293323--1293507	60	3.1	60	73	12	157	45	6	20	28	1.75
1298405--1298442	17	2.3	17	81	4	51	39	10	13	36	1.79
1300395--1300437	16	2.7	16	81	0	50	67	0	0	32	0.91
1300930--1301002	34	2.1	34	97	0	137	36	4	2	56	1.33
1305342--1305398	30	1.9	31	86	10	84	31	0	3	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1305630--1305658	2	14.5	2	100	0	58	48	0	0	51	1.00
1312238--1312268	5	6.2	5	96	0	53	0	16	0	83	0.64
1314028--1314113	29	2.9	30	86	6	97	24	43	18	13	1.87
1314053--1314134	29	2.8	29	88	0	119	24	40	20	14	1.90
1314591--1314631	22	1.9	21	85	5	55	26	0	19	53	1.45
1314934--1314968	8	4.4	8	88	0	52	25	0	11	62	1.28
1316599--1316660	28	2.1	30	94	5	110	56	12	0	30	1.37
1317084--1317126	23	1.9	22	95	4	77	27	27	20	23	1.99
1317113--1317175	32	2.0	32	93	3	110	28	26	30	14	1.95
1317193--1317281	29	3.1	29	85	0	115	15	22	38	23	1.93

Tables:   1   2   3   4   5   6   7