genome.fa.s7924.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007924.1 Hibiscus syriacus cultivar Beakdansim tig00110330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1741266

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1318652--1318700	14	3.5	13	81	10	53	18	4	4	73	1.15
1320583--1320649	29	2.3	29	92	0	107	25	22	23	28	1.99
1322967--1323008	13	3.3	13	86	6	68	16	21	45	16	1.86
1322987--1323040	18	3.0	18	94	0	99	16	16	48	18	1.82
1322971--1323007	12	2.9	13	88	8	58	18	18	45	16	1.85
1330246--1330292	13	3.7	13	91	5	78	21	19	44	14	1.86
1330295--1330349	10	5.6	10	85	10	78	34	29	21	14	1.93
1330295--1330350	19	2.9	19	87	10	78	33	28	21	16	1.95
1335378--1335406	11	2.7	11	94	5	51	17	27	34	20	1.95
1339751--1339899	30	5.1	28	72	17	101	35	3	3	57	1.32
1339856--1339909	23	2.2	24	87	12	76	37	3	0	59	1.15
1341421--1341472	27	1.9	27	84	0	68	36	5	3	53	1.43
1341419--1341478	27	2.2	27	75	0	66	36	5	3	55	1.38
1341742--1341783	22	2.0	22	81	13	52	38	2	2	57	1.25
1342698--1342877	43	4.2	43	86	1	245	25	23	21	30	1.99
1342698--1342874	85	2.1	86	85	1	239	25	22	20	30	1.98
1342740--1342929	85	2.2	86	78	4	188	28	22	20	28	1.98
1342690--1342929	128	1.9	128	79	5	270	27	21	20	30	1.98
1345948--1346037	42	2.1	42	83	0	108	33	12	23	31	1.91
1345984--1346357	82	4.6	81	74	8	301	31	18	19	30	1.96
1356859--1356888	9	3.3	9	100	0	60	33	0	66	0	0.92
1358547--1358585	21	2.0	20	85	10	53	25	15	17	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1358670--1358696	6	4.5	6	100	0	54	33	51	0	14	1.43
1359334--1359408	21	3.6	21	83	7	98	28	26	22	22	1.99
1359417--1359472	29	1.9	29	88	0	85	25	21	23	30	1.99
1359443--1359520	21	3.7	21	96	0	129	23	19	29	28	1.98
1360226--1360307	41	2.0	41	86	9	114	18	19	23	39	1.93
1360275--1360347	22	3.4	22	78	1	85	20	16	26	36	1.93
1360254--1360353	43	2.4	42	82	11	123	18	19	23	40	1.92
1360983--1361016	12	3.1	11	91	8	52	0	17	52	29	1.45
1361112--1361205	41	2.3	41	85	5	118	40	23	20	15	1.91
1361158--1361249	21	4.4	21	70	2	87	32	23	17	26	1.97
1361135--1361231	41	2.4	41	91	0	158	36	23	19	20	1.95
1361347--1361400	21	2.6	21	87	0	81	31	25	14	27	1.95
1361176--1361466	148	2.0	148	93	0	492	31	19	21	27	1.97
1362164--1362216	22	2.4	22	100	0	106	16	18	28	35	1.93
1362329--1362362	6	5.7	6	100	0	68	35	50	14	0	1.44
1362840--1362894	6	9.2	6	95	0	101	1	14	49	34	1.54
1363061--1363094	15	2.3	15	90	10	52	52	2	0	44	1.16
1363087--1363142	26	2.1	27	83	12	71	48	1	0	50	1.11
1368208--1368261	2	27.5	2	96	3	101	50	0	0	50	1.00
1372811--1372860	25	2.0	25	96	0	91	34	12	26	28	1.92
1373235--1373291	3	19.3	3	75	10	55	64	5	1	28	1.25
1373235--1373291	24	2.4	24	86	13	66	64	5	1	28	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1373453--1373742	46	6.7	44	70	11	152	23	18	31	26	1.98
1373452--1373560	40	2.7	40	74	7	112	22	15	33	28	1.95
1373755--1373823	28	2.3	30	83	11	81	47	11	14	26	1.78
1373825--1373942	63	1.9	62	87	8	177	42	11	17	27	1.85
1373861--1373935	36	2.1	36	82	9	91	45	12	17	25	1.82
1373930--1374009	36	2.3	35	82	10	92	38	15	17	28	1.90
1374114--1374188	31	2.4	30	82	12	82	42	12	16	29	1.83
1374245--1374370	68	1.9	67	88	1	189	42	12	14	30	1.82
1374550--1374707	69	2.3	68	79	6	167	43	13	11	32	1.79
1374650--1374717	32	2.1	32	94	0	118	38	13	8	39	1.75
1374703--1374806	52	2.0	53	92	3	174	35	17	14	32	1.90
1374817--1375006	28	6.9	28	90	4	282	45	14	11	28	1.79
1375246--1375349	36	3.0	36	80	4	115	35	12	20	31	1.90
1375247--1375365	36	3.4	36	78	6	111	36	13	21	29	1.91
1376007--1376066	4	15.0	4	80	13	70	28	1	21	48	1.60
1376007--1376066	18	3.4	18	84	4	79	28	1	21	48	1.60
1377863--1377903	20	2.0	20	95	0	73	36	14	21	26	1.93
1383740--1383789	25	2.0	25	96	0	91	34	12	26	28	1.92
1384164--1384221	3	19.3	3	75	7	55	65	5	1	27	1.23
1384164--1384221	24	2.4	24	86	11	66	65	5	1	27	1.23
1384771--1384902	43	3.1	42	73	6	124	48	4	18	28	1.67
1385183--1385245	31	2.0	31	100	0	126	52	6	3	38	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1387098--1387212	56	2.1	56	98	0	221	20	20	19	39	1.93
1394025--1394074	3	16.7	3	100	0	100	34	0	0	66	0.92
1394196--1394394	6	33.2	6	100	0	398	16	50	0	33	1.46
1396943--1396967	13	1.9	13	100	0	50	48	4	8	40	1.51
1417077--1417168	25	3.6	24	76	15	87	42	4	1	52	1.28
1417077--1417149	23	3.0	23	82	6	83	43	5	1	49	1.34
1417077--1417218	27	5.3	27	74	11	98	43	4	1	50	1.30
1418502--1418557	29	1.9	29	88	0	85	32	21	12	33	1.91
1422860--1422898	18	2.1	18	86	13	53	41	25	12	20	1.88
1428268--1428366	49	2.0	49	88	0	144	26	12	14	47	1.78
1434494--1434553	29	2.1	29	96	0	111	25	28	28	18	1.98
1434644--1434725	32	2.6	32	100	0	164	26	26	36	9	1.88
1434712--1434806	29	3.3	29	95	0	163	13	30	32	23	1.93
1435122--1435160	16	2.3	18	86	8	55	38	0	5	56	1.22
1435265--1435356	46	2.0	48	85	12	129	41	0	10	47	1.38
1435397--1435473	34	2.3	33	82	10	95	41	0	11	46	1.40
1435519--1435565	16	3.0	16	84	9	53	29	0	10	59	1.31
1435540--1435570	15	2.1	14	94	5	53	38	0	6	54	1.26
1437720--1437752	17	1.9	17	93	0	57	45	12	6	36	1.66
1437962--1438001	14	2.9	14	88	3	55	47	5	2	45	1.38
1437944--1438301	12	28.9	12	68	14	81	45	8	2	44	1.46
1437960--1438311	26	14.2	26	74	11	263	45	9	1	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437976--1438369	124	3.2	124	94	1	677	45	9	1	43	1.46
1438138--1438369	98	2.4	95	82	8	236	43	9	2	43	1.49
1441212--1441272	26	2.4	24	76	15	59	42	1	6	49	1.38
1441508--1441567	17	3.3	17	73	15	57	48	11	0	40	1.40
1441640--1441666	14	1.9	14	100	0	54	74	14	3	7	1.18
1441637--1441669	17	1.9	17	88	11	50	72	15	3	9	1.21
1442060--1442108	21	2.3	21	82	3	62	51	18	0	30	1.47
1442543--1442610	35	1.9	35	93	0	118	25	16	27	30	1.96
1442650--1442674	12	2.1	12	100	0	50	24	60	0	16	1.36
1442668--1442739	30	2.4	30	95	2	128	19	33	26	20	1.97
1442724--1442755	15	2.1	15	100	0	64	18	40	21	18	1.91
1442968--1443023	29	1.9	29	96	0	103	17	28	37	16	1.91
1446794--1446838	16	2.9	15	80	12	56	46	0	0	53	1.00
1450458--1450552	45	2.1	45	94	0	163	46	6	15	31	1.71
1450458--1450551	16	6.3	15	69	8	57	46	6	15	30	1.71
1454937--1454971	3	11.7	3	93	0	61	37	0	0	62	0.95
1454973--1455290	162	2.0	161	85	4	439	40	16	12	30	1.86
1457680--1457726	23	2.0	23	100	0	94	38	8	4	48	1.53
1467326--1467361	2	18.0	2	100	0	72	50	0	0	50	1.00
1471932--1471981	17	2.7	18	79	11	57	36	8	2	54	1.42
1477183--1477232	21	2.4	20	87	12	66	30	0	12	58	1.34
1478734--1478781	19	2.6	18	81	15	53	41	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479407--1479478	30	2.4	30	83	2	90	54	8	2	34	1.45
1490091--1490145	25	2.3	24	87	9	78	61	9	1	27	1.36
1490457--1490502	21	2.3	20	92	7	76	50	0	0	50	1.00
1492359--1492385	3	9.0	3	100	0	54	33	33	33	0	1.58
1494219--1494278	26	2.3	26	82	8	68	63	1	1	33	1.14
1495055--1495100	25	1.9	25	86	8	69	15	13	2	69	1.28
1498054--1498087	17	2.0	17	88	0	50	47	0	0	52	1.00
1498449--1498503	16	3.4	17	82	7	69	54	0	0	45	0.99
1498840--1498921	31	2.8	30	85	8	107	41	8	9	40	1.69
1498836--1498936	29	3.4	29	77	9	98	41	9	10	37	1.74

Tables:   1   2   3   4   5   6   7