genome.fa.s7924.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007924.1 Hibiscus syriacus cultivar Beakdansim tig00110330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1741266

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1499020--1499124	28	3.6	29	79	7	113	38	9	11	40	1.74
1503414--1503455	21	2.0	21	86	4	59	30	9	14	45	1.77
1510001--1510034	3	11.0	3	93	6	59	67	0	0	32	0.91
1510001--1510034	16	2.2	16	94	5	61	67	0	0	32	0.91
1510032--1510079	25	1.9	25	87	8	71	54	8	2	35	1.42
1510077--1510103	12	2.2	12	100	0	54	33	7	7	51	1.58
1510095--1510240	42	3.7	40	76	12	147	47	6	2	43	1.41
1510240--1510463	35	6.4	34	72	18	151	43	8	5	42	1.57
1510275--1510403	62	2.0	62	85	5	168	45	6	3	44	1.47
1510177--1510407	101	2.3	102	87	4	317	45	6	3	45	1.46
1511508--1511539	9	3.4	9	91	8	55	75	0	0	25	0.81
1511511--1511536	10	2.6	10	100	0	52	84	0	0	15	0.62
1512624--1512655	5	6.4	5	100	0	64	18	0	0	81	0.70
1513743--1513837	39	2.4	39	82	5	102	36	21	20	22	1.95
1513936--1513972	3	12.3	3	100	0	74	32	0	0	67	0.91
1514502--1514623	35	3.4	35	85	2	154	42	22	0	34	1.59
1514619--1514693	35	2.1	35	82	4	89	34	0	21	44	1.53
1516092--1516214	29	4.3	27	73	11	93	47	4	0	47	1.26
1516148--1516186	14	2.9	14	88	7	55	51	5	0	43	1.24
1535503--1535590	43	2.1	41	81	6	97	23	32	18	25	1.97
1535411--1535767	130	2.7	133	81	6	373	27	29	17	25	1.98
1537967--1538002	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1542833--1542859	6	4.5	6	100	0	54	70	0	0	29	0.88
1542862--1542907	15	2.8	17	75	21	53	47	0	0	52	1.00
1543685--1543723	21	1.9	21	89	5	62	35	7	2	53	1.43
1562316--1562403	28	3.0	30	70	12	83	45	3	5	45	1.44
1566319--1566469	45	3.3	45	91	3	230	29	9	21	39	1.86
1576117--1576204	14	5.9	14	70	25	65	73	0	17	9	1.07
1576113--1576287	29	6.1	27	72	19	99	73	0	17	9	1.09
1576152--1576219	16	4.2	16	80	14	70	72	0	20	7	1.09
1576169--1576291	46	2.7	46	75	20	130	73	0	19	7	1.07
1576225--1576261	19	1.9	19	88	0	56	70	0	21	8	1.13
1577574--1577680	37	2.9	37	98	0	205	34	17	24	23	1.96
1577700--1578176	110	4.3	110	92	1	733	26	17	25	30	1.97
1577700--1578176	55	8.7	55	84	6	592	26	17	25	30	1.97
1588910--1588965	23	2.4	23	93	0	94	42	32	7	17	1.77
1601069--1601461	186	2.1	187	93	0	664	45	7	3	43	1.51
1604948--1605016	30	2.3	31	84	5	95	20	8	18	52	1.72
1605864--1605912	18	2.7	18	96	0	89	48	18	12	20	1.79
1611779--1611886	54	2.0	54	92	0	180	19	26	26	26	1.99
1617242--1617304	3	20.0	3	77	9	63	60	6	0	33	1.22
1617520--1617591	35	2.0	36	83	8	92	36	13	9	40	1.78
1617540--1617599	19	3.3	19	65	21	56	38	15	8	38	1.77
1617532--1617610	35	2.3	35	97	0	149	32	13	12	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1619531--1619565	2	17.5	2	87	0	52	54	0	45	0	0.99
1619531--1619565	10	3.5	10	92	0	61	54	0	45	0	0.99
1620333--1620394	25	2.5	24	80	12	72	62	1	0	35	1.05
1620386--1620433	21	2.3	21	85	0	60	68	4	2	25	1.18
1621205--1621278	29	2.4	30	74	14	71	29	1	8	60	1.33
1621290--1621354	26	2.7	24	79	9	60	40	0	4	55	1.21
1626886--1626941	25	2.2	25	84	9	69	66	1	5	26	1.23
1627226--1627277	24	2.2	24	96	0	95	51	3	23	21	1.63
1633645--1633679	15	2.3	15	95	0	61	31	34	20	14	1.92
1640459--1640493	15	2.3	15	100	0	70	28	34	22	14	1.93
1643766--1643818	27	2.0	27	88	0	79	9	47	11	32	1.71
1645023--1645083	31	2.0	31	83	6	79	45	16	21	16	1.85
1653237--1653285	14	3.8	14	74	20	52	67	16	6	10	1.39
1653237--1653289	24	2.2	24	89	0	79	67	15	5	11	1.38
1655973--1656047	22	3.3	22	67	20	64	34	8	18	38	1.80
1655964--1656057	46	2.0	46	95	0	170	36	6	20	37	1.78
1659673--1659716	18	2.4	18	81	7	54	18	43	20	18	1.89
1660428--1660535	24	4.5	24	73	12	96	19	15	14	50	1.79
1660428--1660536	48	2.3	49	84	9	136	19	15	14	50	1.78
1662586--1662628	13	3.3	13	80	0	59	18	37	23	20	1.94
1668747--1668831	22	3.9	22	75	13	68	23	35	24	16	1.95
1668792--1668829	20	1.9	20	88	0	58	26	36	26	10	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1672084--1672124	17	2.3	19	87	8	59	43	4	14	36	1.67
1673752--1673821	12	5.8	12	78	6	70	15	14	18	51	1.77
1673715--1673825	48	2.3	48	84	6	127	18	17	17	46	1.84
1673753--1673825	24	3.0	24	81	0	101	17	12	17	52	1.75
1673758--1673809	17	2.8	18	72	21	54	15	15	19	50	1.79
1677058--1677103	21	2.4	18	85	10	56	21	2	17	58	1.49
1682799--1682857	29	2.0	29	93	0	100	40	11	22	25	1.88
1683893--1683928	14	2.6	14	91	4	56	16	0	19	63	1.30
1688718--1688751	16	2.1	17	88	5	52	73	0	5	20	1.04
1690917--1691062	72	2.0	73	91	1	240	21	27	26	23	1.99
1693780--1693829	24	2.1	24	100	0	100	38	20	18	24	1.93
1698147--1698198	27	1.9	27	88	0	77	30	13	50	5	1.65
1698344--1698440	31	3.1	31	90	0	149	47	15	18	18	1.83
1701005--1701058	25	2.3	22	84	12	72	24	0	3	72	1.01
1701002--1701056	26	2.2	26	84	9	71	23	0	5	70	1.07
1715437--1715483	14	3.4	14	91	2	69	48	19	0	31	1.49
1716476--1716542	31	2.2	31	76	5	75	41	5	10	41	1.64
1729285--1729325	22	1.9	21	90	5	64	63	0	4	31	1.15
1730713--1730778	20	3.3	19	70	16	53	37	4	1	56	1.29
1739822--1739867	23	2.0	23	91	8	76	26	17	13	43	1.85

Tables:   1   2   3   4   5   6   7

The End!