genome.fa.s7924.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007924.1 Hibiscus syriacus cultivar Beakdansim tig00110330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1741266

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
222444--222497	2	27.0	2	100	0	108	50	0	0	50	1.00
224768--224792	7	3.6	7	100	0	50	44	12	12	32	1.78
224822--224861	21	2.0	19	85	9	53	45	0	0	55	0.99
225452--225510	30	1.9	31	89	3	93	38	11	23	25	1.89
227341--228576	630	2.0	630	94	1	2163	26	17	16	39	1.90
230332--230415	23	3.7	23	88	0	123	27	26	27	19	1.99
230335--230445	46	2.4	46	83	5	136	30	24	25	19	1.98
230637--230696	31	2.0	31	83	9	79	35	21	3	40	1.70
237276--237320	23	2.0	23	90	0	72	31	26	24	17	1.97
237279--237348	22	3.2	22	80	9	81	35	24	20	20	1.96
237566--237624	31	1.9	31	83	10	77	32	23	3	40	1.71
237969--238124	64	2.4	64	81	8	167	26	21	20	32	1.98
238647--238672	13	2.0	13	100	0	52	69	0	30	0	0.89
239303--239353	16	3.1	17	81	13	54	25	0	3	70	1.04
243370--243409	14	2.9	14	80	0	53	35	0	0	65	0.93
243396--243438	17	2.5	17	82	10	52	34	0	0	65	0.93
250972--251005	2	17.0	2	100	0	68	50	0	0	50	1.00
253354--253385	9	3.6	9	100	0	64	0	43	0	56	0.99
256359--257991	831	2.0	817	88	3	2452	30	12	13	44	1.80
258213--258261	23	2.1	23	92	0	80	28	12	2	57	1.46
258683--258862	87	2.1	87	86	0	243	43	10	10	36	1.73
261815--261842	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261906--261933	2	14.0	2	100	0	56	50	0	0	50	1.00
263439--263486	25	1.9	25	82	0	60	52	4	10	33	1.55
267611--267750	21	6.6	21	67	19	67	50	2	1	46	1.22
267611--267729	21	5.7	21	69	15	77	47	1	1	48	1.21
267603--267724	42	2.9	42	80	12	135	47	0	1	50	1.16
269576--269635	28	2.1	29	87	3	86	35	3	3	58	1.31
271262--271342	29	2.8	29	80	9	94	43	6	1	49	1.35
271627--271679	19	2.7	20	73	5	54	41	3	3	50	1.38
272164--272215	24	2.2	23	80	6	59	50	1	3	44	1.31
272174--272224	24	2.1	24	82	7	59	56	0	1	41	1.10
283095--283121	13	2.1	13	100	0	54	51	0	7	40	1.30
284488--284518	2	15.5	2	93	0	53	48	3	0	48	1.17
307520--307553	11	3.1	11	86	0	50	0	17	0	82	0.67
307940--307977	19	2.0	19	94	0	67	28	10	10	50	1.70
320659--320738	31	2.6	31	86	7	112	40	13	7	38	1.73
321194--321511	157	2.0	158	99	0	629	39	5	19	35	1.74
332030--332094	22	2.9	23	75	8	55	53	15	12	18	1.72
332811--332842	16	2.0	16	100	0	64	25	0	12	62	1.30
338195--338236	21	2.0	21	95	0	75	38	11	28	21	1.89
348083--348148	18	3.7	18	91	0	105	30	31	13	24	1.94
348075--348126	26	1.9	28	88	7	81	28	28	13	28	1.94
348076--348148	8	8.4	8	77	16	74	30	31	13	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348091--348144	10	5.8	10	77	16	62	29	31	14	24	1.95
352408--352636	20	11.4	20	81	5	230	37	26	17	18	1.93
353329--353375	24	2.0	24	87	8	69	25	14	21	38	1.92
355856--356107	34	7.2	33	70	17	179	46	17	23	13	1.83
355870--356107	53	4.5	53	98	0	449	46	17	22	13	1.83
356084--356199	53	2.2	52	86	3	160	18	23	18	38	1.93
356122--356209	19	4.8	19	82	14	123	13	22	15	47	1.81
356300--356336	14	2.6	14	91	0	65	45	21	0	32	1.52
358260--358432	19	9.6	19	76	12	168	46	22	20	10	1.82
358335--358427	33	2.8	33	91	0	159	47	21	20	10	1.80
358294--358432	52	2.7	52	74	8	156	46	21	21	10	1.80
358444--358502	14	3.9	14	76	20	64	6	16	28	47	1.72
358428--358521	33	2.8	33	93	0	161	7	17	27	47	1.74
358428--358537	19	6.3	18	73	20	92	9	16	28	46	1.77
358635--358950	93	3.4	93	99	0	623	45	18	13	22	1.85
360637--360743	19	5.7	20	77	15	104	46	18	23	11	1.81
360635--360699	21	3.1	21	82	4	96	47	15	26	10	1.78
360771--360841	21	3.4	21	78	7	90	14	19	16	49	1.80
360924--360994	33	2.2	33	94	0	124	47	16	23	11	1.79
361374--361566	20	9.6	20	85	5	246	18	19	27	34	1.95
368383--368423	16	2.6	16	96	3	75	36	17	21	24	1.94
371443--371480	14	2.7	14	84	11	51	21	10	28	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373517--373634	21	5.8	20	73	5	67	37	22	18	21	1.94
373583--373777	20	9.6	20	78	4	122	35	25	19	18	1.95
373583--373776	61	3.2	61	82	2	248	35	25	19	19	1.95
373583--373777	81	2.4	80	83	4	239	35	25	19	18	1.95
373622--373774	41	3.8	41	85	3	211	33	25	19	20	1.96
374158--374228	33	2.2	33	92	0	115	12	22	16	47	1.80
374349--374403	14	3.6	14	73	21	56	41	23	25	9	1.83
374349--374419	33	2.2	33	94	0	124	43	25	22	8	1.81
374415--374512	19	5.7	19	70	22	81	10	24	22	42	1.84
374437--374526	14	5.7	14	74	23	81	8	25	23	42	1.83
374420--374534	33	3.5	33	95	0	212	9	24	20	45	1.81
376232--376609	93	4.1	93	98	1	726	22	12	18	46	1.82
376653--376750	19	5.4	19	74	19	93	44	28	17	9	1.79
376653--376779	18	7.3	18	73	18	108	44	29	17	8	1.78
376687--376779	33	2.9	32	90	6	143	45	29	18	7	1.76
376775--376909	19	7.6	19	75	16	119	9	18	25	45	1.80
376797--376853	14	3.7	14	72	20	51	7	19	28	45	1.76
376780--376872	33	2.8	33	91	0	159	8	19	24	47	1.77
378814--378848	14	2.6	14	90	4	54	31	0	22	45	1.53
378955--379037	19	4.6	19	77	17	104	43	18	22	15	1.87
379044--379440	33	11.5	33	83	11	303	14	21	18	46	1.84
379066--379440	19	21.4	19	77	19	415	13	21	18	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379044--379412	52	7.0	52	85	10	493	14	21	17	46	1.83
379366--379426	14	3.9	14	75	22	59	14	16	19	49	1.80
381719--381743	12	2.1	12	100	0	50	0	28	0	72	0.86
381918--381964	24	2.0	24	87	8	69	38	21	14	25	1.92
382641--383031	20	19.5	20	83	6	441	20	18	25	36	1.95
382646--383050	81	5.0	81	82	6	389	21	18	25	35	1.96
383639--383767	40	3.3	39	68	15	113	35	7	18	37	1.80
383533--383867	153	2.2	152	85	2	474	36	11	16	35	1.85
383541--383867	76	4.3	76	86	1	449	36	10	16	35	1.84
388885--389179	77	3.8	77	81	1	315	37	9	16	35	1.82
389228--389281	20	2.7	20	88	0	72	33	14	9	42	1.78
389285--389803	77	6.8	76	83	5	542	36	16	8	38	1.79
389285--389803	231	2.3	230	84	3	668	36	16	8	38	1.79
393678--393749	30	2.4	30	95	0	126	30	23	20	25	1.99
393789--393906	32	3.7	31	82	7	157	30	18	17	33	1.95
393761--393926	63	2.7	63	96	0	298	31	18	17	32	1.94
393737--393923	31	5.9	32	77	12	199	31	19	18	31	1.96
398166--398216	21	2.4	21	86	0	75	19	41	31	7	1.80
398179--398224	21	2.2	21	88	0	65	26	39	23	10	1.88
401533--401574	18	2.3	19	79	4	50	26	0	2	71	0.98
401523--401573	19	2.6	19	82	11	59	25	0	1	72	0.95
404358--404401	22	2.1	21	83	8	54	56	2	6	34	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407606--407643	6	6.3	6	93	0	67	13	52	2	31	1.54
416325--416401	28	2.9	28	86	5	97	50	2	5	41	1.38
416628--416659	15	2.1	15	100	0	64	18	9	12	59	1.59
420167--420270	51	2.0	51	94	3	183	23	8	15	52	1.70
423220--423607	155	2.5	154	87	6	527	27	18	6	47	1.73
423855--423898	2	22.0	2	90	0	70	52	0	2	45	1.13
426800--427018	27	8.2	27	81	8	216	32	26	26	15	1.95
428709--428748	21	2.0	21	85	5	55	35	5	0	60	1.19
428738--428780	16	2.7	17	82	13	56	48	0	0	51	1.00
429198--429284	31	2.9	29	72	12	86	37	12	13	35	1.83

Tables:   1   2   3   4   5   6   7