genome.fa.s7924.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007924.1 Hibiscus syriacus cultivar Beakdansim tig00110330_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1741266

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429185--429274	31	3.0	30	73	12	103	34	11	14	40	1.81
437253--437303	12	4.3	12	76	18	54	31	0	1	66	1.03
437292--437359	23	2.8	25	84	10	79	44	0	2	52	1.16
437324--437365	12	3.3	12	79	20	50	33	0	7	59	1.25
437264--437420	63	2.5	63	87	8	232	40	0	3	56	1.15
437414--437464	17	2.9	17	81	16	59	41	1	0	56	1.10
438722--439076	5	71.6	5	86	13	513	59	0	0	40	0.97
438722--439076	88	3.9	90	87	11	489	59	0	0	40	0.97
443926--443958	2	17.0	2	93	6	59	51	0	0	48	1.00
461670--461699	3	10.0	3	100	0	60	33	0	0	66	0.92
462506--462540	3	12.0	3	93	6	63	68	0	0	31	0.90
464102--464144	7	6.6	7	89	5	56	58	0	41	0	0.98
464106--464144	3	12.3	3	84	10	51	58	0	41	0	0.98
471889--471926	18	2.1	18	100	0	76	26	15	18	39	1.91
474451--474475	12	2.1	12	100	0	50	24	24	0	52	1.48
476058--476082	2	12.5	2	100	0	50	52	0	0	48	1.00
476876--476913	16	2.4	17	86	13	62	63	18	15	2	1.43
476884--476915	16	2.0	16	100	0	64	62	12	18	6	1.50
479746--479818	30	2.4	30	81	2	83	35	8	15	41	1.77
480093--480136	2	22.0	2	100	0	88	50	0	0	50	1.00
482760--482835	40	1.9	40	83	0	98	44	1	5	48	1.33
483162--483207	19	2.4	19	89	7	67	54	6	4	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
484085--484123	19	2.1	19	95	0	69	20	30	20	28	1.98
484141--484198	30	1.9	30	100	0	116	50	6	13	29	1.68
493564--493599	2	18.5	2	94	5	65	50	0	0	50	1.00
495384--495439	22	2.6	22	80	8	62	62	5	3	28	1.34
496672--496711	20	2.1	19	85	4	53	35	7	35	22	1.82
507281--507399	63	1.9	63	87	0	175	32	5	10	52	1.57
509508--509549	15	2.8	15	92	7	68	73	2	4	19	1.12
509485--509561	34	2.3	33	80	6	84	72	2	9	15	1.20
509540--509626	23	3.8	22	72	15	68	74	3	8	13	1.17
514442--514524	21	3.9	21	73	9	78	18	25	34	21	1.96
520644--520690	18	2.6	18	96	0	85	57	29	0	12	1.36
520644--520690	10	5.1	10	78	19	57	57	29	0	12	1.36
522251--522287	19	1.9	19	89	10	58	35	0	8	56	1.29
522696--522733	20	1.9	20	88	0	58	13	26	36	23	1.91
526513--526552	21	1.9	21	85	10	55	35	10	2	52	1.48
529288--529346	31	2.0	31	90	6	95	55	3	10	30	1.49
535341--535418	6	13.0	6	80	8	61	74	2	3	19	1.09
535413--535472	27	2.2	26	85	11	77	51	6	0	41	1.28
535445--535484	22	1.9	21	85	10	55	47	12	2	37	1.55
535483--535574	26	3.6	25	80	14	98	43	7	0	48	1.31
535483--535568	27	3.4	23	79	17	84	45	8	0	46	1.33
535484--535595	25	4.4	25	82	8	113	43	8	0	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552752--552781	5	6.0	5	100	0	60	60	0	0	40	0.97
554073--554129	24	2.3	24	96	3	105	49	21	7	22	1.73
560750--560988	118	2.0	118	100	0	478	43	21	13	21	1.87
566344--566386	22	2.0	22	90	0	68	53	20	9	16	1.70
566709--566744	18	1.9	19	88	5	56	58	16	5	19	1.58
580668--580730	23	2.9	22	76	4	65	52	14	17	15	1.75
586424--586454	2	15.5	2	100	0	62	51	0	0	48	1.00
590977--591006	11	2.8	11	95	5	53	46	0	53	0	1.00
592862--592901	19	2.2	19	86	4	55	72	5	12	10	1.26
599662--599705	22	2.0	23	86	4	63	47	9	6	36	1.62
608703--608843	64	2.2	63	82	7	169	32	17	24	25	1.97
609869--609933	31	2.1	31	85	5	87	21	16	23	38	1.93
609922--609990	29	2.3	30	85	2	86	18	18	28	33	1.95
610450--610912	4	115.8	4	100	0	926	25	0	24	50	1.50
612539--612588	18	2.9	17	85	11	66	28	30	6	36	1.81
619660--619711	20	2.6	21	79	11	65	26	9	11	51	1.68
619769--619805	15	2.5	15	86	0	56	32	16	16	35	1.91
620007--620132	66	1.9	66	95	0	225	47	4	17	30	1.68
620006--620152	66	2.3	61	86	7	197	50	4	16	29	1.63
628439--628517	16	5.3	14	78	15	70	34	2	1	62	1.17
628462--628523	32	2.0	31	90	3	97	33	0	1	64	1.03
628976--629056	36	2.2	36	86	0	108	33	12	38	16	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632963--633023	25	2.6	23	82	7	70	27	0	4	67	1.11
633145--633186	21	2.0	21	100	0	84	52	0	19	28	1.46
633505--633534	2	15.5	2	93	6	53	50	0	0	50	1.00
635144--635185	21	2.0	20	86	9	57	59	11	2	26	1.45
638046--638074	3	9.7	3	100	0	58	65	0	34	0	0.93
652047--652078	10	3.0	11	90	9	57	53	28	0	18	1.45
653854--653900	2	23.5	2	100	0	94	51	0	0	48	1.00
654364--654427	21	3.0	21	79	9	67	15	25	37	21	1.93
662791--662820	13	2.2	14	94	5	53	20	3	0	76	0.92
662798--662833	17	2.1	17	89	0	54	22	5	0	72	1.05
665512--665603	42	2.2	42	82	3	105	25	9	38	27	1.87
669364--669429	31	2.1	31	91	0	105	42	10	13	33	1.79
670595--670620	2	13.0	2	100	0	52	50	0	0	50	1.00
670933--670958	2	13.0	2	100	0	52	50	0	0	50	1.00
678840--678885	23	2.0	23	100	0	92	34	21	13	30	1.91
687915--688021	54	2.0	54	94	0	187	29	27	15	27	1.96
687915--688036	54	2.2	53	87	8	174	31	27	14	25	1.95
690002--690035	2	17.0	2	100	0	68	50	0	0	50	1.00
700129--700212	33	2.6	33	74	12	84	41	2	3	52	1.31
700263--700320	10	5.6	10	76	15	55	22	1	6	68	1.22
700263--700320	21	2.8	20	75	17	55	22	1	6	68	1.22
700608--700996	185	2.1	184	91	3	624	42	3	8	46	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701002--701035	9	3.7	9	96	4	59	23	8	17	50	1.74
708491--708517	13	2.1	13	100	0	54	37	14	25	22	1.93
718599--718662	27	2.4	27	94	5	114	39	17	12	31	1.87
722361--722428	27	2.6	27	95	4	122	41	16	11	30	1.84
723895--723947	18	2.9	18	100	0	106	26	33	22	16	1.96
726074--726221	30	5.1	30	72	14	94	20	11	4	64	1.42
727838--727882	23	2.0	23	82	8	56	46	13	2	37	1.55
728233--728258	2	13.0	2	100	0	52	50	0	0	50	1.00
731020--731075	23	2.5	22	80	11	69	32	19	16	32	1.94
743669--743696	8	3.5	8	100	0	56	39	0	10	50	1.37
747209--747247	10	4.2	10	87	12	57	84	0	5	10	0.76
747209--747256	17	2.7	18	87	9	71	81	0	8	10	0.88
748249--748456	53	3.9	53	84	7	228	30	15	25	27	1.96
748249--748412	53	3.1	53	88	5	240	30	15	26	27	1.96
748381--748945	51	10.7	51	80	7	488	34	18	24	23	1.96
748416--748885	105	4.4	105	87	5	676	34	18	24	22	1.96
748416--748885	54	8.9	52	82	6	534	34	18	24	22	1.96
748416--748953	54	10.1	55	81	7	521	34	18	24	22	1.96
752556--752626	28	2.7	26	81	16	83	4	23	0	71	1.03
753210--753242	12	2.8	12	90	4	50	66	3	0	30	1.06
754122--754168	22	2.0	24	84	12	62	38	10	2	48	1.50
762778--762848	31	2.3	32	79	18	80	38	1	2	57	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768815--768854	21	1.9	21	89	0	62	10	25	40	25	1.86
778956--779032	30	2.6	31	81	8	88	45	1	25	27	1.61
779571--779605	12	3.1	12	84	16	56	34	0	0	65	0.93
779570--779623	22	2.4	23	87	3	74	38	0	0	61	0.96
787279--787327	23	2.1	23	100	0	98	0	40	0	59	0.98
789560--789650	4	22.8	4	100	0	182	25	0	24	50	1.49
796101--796127	2	13.5	2	100	0	54	48	0	51	0	1.00
796640--796895	128	2.0	128	98	0	494	45	13	17	23	1.84
808898--809382	227	2.1	228	95	1	875	44	8	7	39	1.63
809662--809708	20	2.4	19	89	10	76	55	10	17	17	1.69

Tables:   1   2   3   4   5   6   7