genome.fa.s7925.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007925.1 Hibiscus syriacus cultivar Beakdansim tig00110331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1316088

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 790 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383981--384171	63	3.0	63	94	1	339	36	23	1	39	1.62
384301--385097	138	5.7	138	89	2	1188	31	21	22	23	1.98
390516--391083	55	10.3	55	91	0	852	26	18	19	34	1.95
394025--394062	14	2.6	14	91	4	58	36	0	5	57	1.21
394065--394107	22	2.0	22	90	0	68	34	0	13	51	1.42
394132--394190	31	1.9	31	92	0	100	42	10	6	40	1.65
396559--396601	16	2.7	15	82	3	50	13	2	23	60	1.45
401183--402213	76	13.6	76	97	0	1881	35	22	20	21	1.96
402173--402242	29	2.4	29	97	0	131	38	25	17	18	1.92
402021--402394	181	2.1	181	98	0	730	36	22	20	20	1.95
402097--402318	105	2.1	105	98	0	426	36	23	19	20	1.95
402202--402504	76	4.0	76	97	0	570	36	22	20	21	1.95
403180--403259	22	3.6	22	72	0	79	40	12	11	36	1.79
403623--403783	59	2.9	55	82	8	216	22	22	16	37	1.94
405862--406088	115	2.0	115	91	0	364	31	20	14	32	1.93
415085--415131	13	3.7	13	75	16	53	61	0	0	38	0.96
415078--415141	28	2.3	29	82	12	73	54	0	0	45	0.99
415090--415138	25	2.0	24	92	4	80	57	0	0	42	0.99
415213--415444	68	3.4	67	72	11	186	25	25	19	29	1.99
415467--415577	19	5.8	19	73	19	90	38	25	9	26	1.87
415468--415577	38	2.9	38	71	20	111	39	24	10	26	1.87
417059--417104	14	3.1	15	76	14	51	30	4	0	65	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417283--417392	8	13.4	8	71	11	62	18	2	2	76	1.03
417243--417351	41	2.6	42	74	21	102	25	0	4	68	1.14
417283--417384	35	3.0	34	83	8	102	18	2	2	75	1.06
420495--420531	14	2.6	15	83	8	51	75	5	18	0	0.99
421582--421679	32	3.1	32	90	0	151	32	12	22	32	1.91
421589--421700	32	3.5	32	90	1	145	31	15	20	33	1.93
421935--422394	110	4.2	110	94	0	812	34	23	18	23	1.96
422336--422437	43	2.4	43	93	0	168	39	25	19	15	1.91
422224--422547	153	2.1	153	90	0	495	34	22	18	24	1.96
422114--422629	263	2.0	259	88	1	762	34	22	18	24	1.97
422377--422633	110	2.4	108	86	3	349	33	22	19	24	1.97
422735--422941	84	2.5	84	87	0	288	29	27	17	25	1.98
423511--423620	37	3.0	37	94	0	193	42	13	13	30	1.83
424161--424315	81	1.9	79	82	10	190	28	2	3	65	1.21
424155--424327	39	4.5	40	72	20	122	27	3	2	66	1.22
424324--424422	20	4.7	19	73	16	63	15	10	0	74	1.06
424294--424412	16	7.6	16	67	16	54	16	8	0	74	1.05
425057--425251	30	6.8	30	73	11	131	36	5	2	56	1.33
425066--425124	28	2.3	27	82	11	70	37	10	0	52	1.35
425044--425124	30	2.8	29	81	9	94	39	9	0	50	1.36
425203--425256	27	2.0	28	88	3	83	35	5	1	57	1.33
425297--425357	31	2.0	31	83	6	79	52	0	8	39	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425355--425418	31	2.0	32	84	3	85	43	6	0	50	1.27
426007--426055	20	2.4	22	83	13	68	53	0	0	46	1.00
426040--426072	11	2.8	12	86	9	50	63	0	0	36	0.95
426592--426637	12	3.6	12	81	16	56	45	17	19	17	1.85
426598--426638	12	3.1	13	80	19	57	46	14	17	21	1.84
428928--428967	21	1.9	21	94	0	71	30	15	7	47	1.72
428962--429060	33	3.0	33	94	1	164	32	7	15	45	1.73
429046--429100	13	4.2	13	75	13	58	34	3	12	49	1.59
429296--429348	21	2.5	21	100	0	106	18	20	28	32	1.97
429518--429556	15	2.6	15	87	0	60	28	12	12	46	1.79
429647--429678	16	2.0	17	88	11	50	43	21	21	12	1.86
432059--432141	41	2.0	40	97	2	157	60	12	12	15	1.60
433919--433952	17	2.1	16	88	5	50	76	0	8	14	1.01
447593--447645	26	2.0	26	82	7	63	32	5	1	60	1.31
455193--455235	20	2.2	19	83	4	50	37	2	0	60	1.10
459160--459237	35	2.3	32	87	10	104	39	5	16	38	1.71
463672--463738	32	2.0	33	91	8	109	41	4	17	35	1.70
463675--463758	35	2.6	32	80	15	100	41	5	19	33	1.75
467179--467263	3	27.7	3	81	9	100	61	0	0	38	0.96
467482--468987	229	6.7	228	88	5	1798	29	18	14	37	1.91
467482--468991	113	13.5	113	80	6	1659	29	18	14	37	1.90
468933--469045	59	1.9	59	94	0	199	29	18	10	41	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468822--469166	175	2.0	170	96	2	627	29	20	11	38	1.88
468992--470222	113	10.9	112	82	6	1511	29	18	14	37	1.90
469685--469734	17	2.9	17	70	21	50	22	18	10	50	1.76
468992--470222	229	5.5	225	90	5	1602	29	18	14	37	1.90
470630--470706	22	3.5	22	83	0	109	40	12	12	33	1.82
471059--471260	54	3.9	53	79	10	186	25	21	14	38	1.92
473203--473422	114	1.9	114	91	1	361	30	20	15	33	1.94
475626--475674	6	8.5	6	82	17	59	0	10	4	85	0.71
475626--475674	11	4.3	11	81	5	53	0	10	4	85	0.71
475964--476003	2	20.0	2	100	0	80	50	0	0	50	1.00
480336--480385	24	2.1	24	88	7	75	62	4	6	28	1.37
482512--482590	3	25.7	3	82	10	97	62	0	0	37	0.96
486195--486275	42	1.9	42	89	0	126	27	11	32	29	1.91
486197--486299	42	2.5	42	80	0	116	26	12	30	31	1.93
487180--487462	139	2.1	137	84	2	361	38	17	14	28	1.89
497560--497584	11	2.3	11	100	0	50	24	12	24	40	1.88
507861--507892	16	2.0	16	100	0	64	37	6	25	31	1.81
529143--529180	18	2.1	18	95	0	67	31	13	15	39	1.86
531518--531581	23	2.8	22	85	4	83	26	26	26	20	1.99
531597--531814	103	2.1	103	94	0	382	38	23	12	25	1.91
532283--532319	19	1.9	19	88	0	56	10	29	35	24	1.89
538403--538458	23	2.4	23	87	0	76	28	25	26	19	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538482--538699	103	2.1	103	96	0	400	36	23	13	26	1.92
541705--541747	19	2.4	19	84	7	54	23	27	20	27	1.99
541632--541753	65	1.9	65	83	6	158	31	22	18	27	1.97
544906--545163	129	2.0	129	98	0	498	36	10	16	36	1.84
549148--549191	21	2.1	21	82	0	52	9	43	15	31	1.79
552183--552219	2	18.5	2	100	0	74	48	0	0	51	1.00
552377--552402	13	2.0	13	100	0	52	23	0	0	76	0.78
554891--554940	13	3.8	13	100	0	100	56	6	0	38	1.24
555811--555915	32	3.3	32	81	4	106	35	15	17	32	1.91
559966--560058	32	2.9	32	87	3	116	33	18	17	31	1.94
562906--562970	28	2.3	28	100	0	130	27	13	10	47	1.76
564723--564846	57	2.2	56	80	8	135	19	6	14	59	1.56
567072--567201	70	1.9	70	83	4	174	39	21	16	22	1.92
570472--570510	12	3.4	11	89	7	51	33	0	2	64	1.08
572599--572629	12	2.6	12	94	0	53	54	0	45	0	0.99
576412--576520	55	2.0	55	96	3	204	29	18	12	39	1.88
576574--576602	8	3.6	8	100	0	58	55	0	10	34	1.34
576741--576791	5	10.4	5	80	19	63	56	0	0	43	0.99
576751--576813	20	2.9	20	76	17	63	55	0	0	44	0.99
576746--576796	25	2.0	25	88	7	77	56	0	0	43	0.99
576729--576806	29	2.6	30	92	6	124	57	0	0	42	0.98
580696--580802	54	2.0	53	98	1	205	45	13	24	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583149--583196	23	2.1	23	88	0	69	35	12	18	33	1.89
583663--583734	23	3.2	23	90	4	110	37	20	5	36	1.76
583501--585604	422	5.0	426	94	3	3650	39	12	7	40	1.72
584085--584156	23	3.2	23	88	4	110	38	22	5	33	1.77
584511--584571	21	3.0	21	85	4	88	37	24	4	32	1.77
584519--584571	20	2.6	21	93	3	90	35	22	5	35	1.78
584927--584996	23	3.2	22	78	10	72	40	21	4	34	1.73
583513--585604	421	5.0	422	93	4	3585	39	12	7	40	1.72
585338--585408	21	3.3	21	75	13	63	39	21	4	35	1.73
585343--585413	23	3.2	22	80	8	81	39	21	4	35	1.73

Tables:   1   2   3   4   5   6   7