genome.fa.s7925.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007925.1 Hibiscus syriacus cultivar Beakdansim tig00110331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1316088

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 790 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1036464--1036535	3	23.3	3	91	5	117	63	0	0	36	0.94
1037091--1037732	44	14.6	44	66	11	138	27	20	20	31	1.98
1037164--1037506	178	1.9	179	86	2	490	27	21	20	29	1.98
1037331--1037783	128	3.6	128	86	1	633	27	19	20	32	1.97
1046592--1046744	64	2.4	64	81	6	166	35	18	22	22	1.96
1046752--1046789	20	1.9	20	94	0	67	31	18	23	26	1.97
1047557--1047608	18	2.9	18	91	0	86	17	19	32	30	1.95
1050871--1050922	19	2.7	19	96	0	95	32	17	28	21	1.96
1050812--1050986	83	2.1	83	85	4	228	34	17	24	23	1.96
1052402--1052451	24	2.1	24	81	7	57	38	4	16	42	1.66
1054912--1054952	20	2.0	21	85	4	57	65	2	9	21	1.34
1055455--1055479	12	2.1	12	100	0	50	56	8	20	16	1.65
1055555--1055582	3	9.3	3	100	0	56	64	0	0	35	0.94
1055974--1056023	23	2.2	23	100	0	100	54	14	8	24	1.66
1057787--1057924	69	2.0	69	92	0	231	29	15	19	34	1.93
1073711--1073746	18	2.1	18	89	5	56	8	2	5	83	0.89
1083962--1084002	17	2.5	17	84	4	57	78	0	21	0	0.76
1083962--1084023	23	2.7	22	80	9	70	75	1	20	1	0.97
1083997--1084031	18	1.9	18	88	0	52	74	2	17	5	1.14
1084756--1085312	105	5.4	106	91	3	895	34	24	18	23	1.96
1084755--1085312	203	2.7	207	92	2	901	34	24	18	23	1.96
1087110--1087144	17	2.1	17	89	5	54	8	2	5	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088449--1088510	27	2.3	27	86	2	90	27	29	1	41	1.65
1089141--1089168	2	14.0	2	100	0	56	50	0	0	50	1.00
1092649--1092698	19	2.5	19	81	15	57	22	10	8	60	1.55
1092988--1093014	10	2.7	10	100	0	54	48	0	11	40	1.39
1095567--1095619	21	2.5	20	82	14	63	67	5	0	26	1.12
1095568--1095615	22	2.2	21	78	10	53	72	6	0	20	1.05
1096081--1096150	32	2.2	32	87	7	99	25	5	21	47	1.73
1096078--1096150	31	2.3	34	83	11	100	26	5	21	46	1.73
1100423--1100492	35	2.0	35	94	0	122	35	10	14	40	1.79
1100764--1100795	16	2.1	15	94	5	55	53	0	3	43	1.16
1100794--1100839	17	2.5	19	79	13	60	43	0	0	56	0.99
1100784--1100843	11	6.0	10	72	20	54	43	0	0	56	0.99
1101274--1101334	30	2.0	30	87	0	86	36	13	8	42	1.74
1101282--1101354	30	2.4	30	86	0	92	39	15	6	38	1.74
1104010--1104060	18	2.8	18	79	5	59	19	25	25	29	1.99
1104455--1104513	28	2.1	28	100	0	118	22	25	23	28	1.99
1105374--1105436	23	2.7	23	85	0	72	34	22	23	19	1.96
1105754--1105791	19	2.0	19	94	0	67	55	21	2	21	1.56
1107016--1107093	21	3.7	21	82	0	93	44	17	11	25	1.83
1107011--1107111	42	2.4	42	77	6	105	42	19	10	26	1.84
1110577--1110616	21	1.9	21	89	0	62	10	25	40	25	1.86
1110598--1110660	21	2.9	21	88	4	90	19	25	34	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1118168--1118195	11	2.5	11	100	0	56	32	10	0	57	1.33
1119331--1119398	34	2.0	33	82	2	82	33	14	26	25	1.94
1121903--1122008	21	5.0	21	77	8	108	20	36	24	17	1.94
1124742--1124904	20	7.9	23	80	11	85	20	34	27	17	1.95
1124761--1124902	20	7.0	20	80	7	153	20	36	27	15	1.93
1124761--1124902	40	3.5	40	87	5	187	20	36	27	15	1.93
1124763--1124903	60	2.3	61	86	6	205	19	36	27	16	1.93
1125236--1125305	34	2.1	32	86	5	95	32	15	30	21	1.94
1125606--1125644	21	1.9	20	84	5	51	41	5	15	38	1.69
1125840--1125963	21	6.0	21	81	4	135	19	34	27	18	1.95
1125840--1125963	43	3.0	40	77	14	126	19	34	27	18	1.95
1127116--1127163	22	2.2	22	96	0	87	14	39	29	16	1.88
1128139--1128301	20	8.1	20	78	6	150	19	36	27	16	1.93
1128163--1128222	21	2.8	22	84	5	77	18	38	25	18	1.93
1128154--1128302	41	3.6	41	81	3	158	18	37	27	16	1.92
1128582--1128651	34	2.1	32	86	5	95	32	15	30	21	1.94
1129186--1129249	21	3.0	21	82	13	78	17	37	28	17	1.92
1129187--1129251	22	3.0	22	82	6	80	16	35	29	18	1.93
1130406--1130495	22	4.2	22	85	5	121	14	36	28	20	1.92
1130411--1130494	42	2.0	42	88	0	123	15	35	28	20	1.93
1131445--1131543	42	2.4	40	81	6	126	19	30	30	20	1.97
1131445--1131536	20	4.5	20	83	5	121	19	31	31	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1135601--1135685	21	4.0	21	80	8	82	18	38	24	17	1.92
1135619--1135725	20	5.2	20	73	14	58	18	37	26	17	1.93
1136647--1136751	43	2.5	40	80	10	129	17	37	27	18	1.93
1136647--1136751	21	5.0	21	89	3	140	17	37	27	18	1.93
1140491--1140583	38	2.4	38	89	3	143	23	26	24	24	2.00
1140735--1140839	46	2.3	46	91	1	167	33	17	5	43	1.72
1141246--1141315	34	2.0	35	91	5	115	21	31	30	17	1.96
1141260--1141317	19	3.3	18	68	26	52	18	36	27	17	1.94
1144108--1144339	96	2.4	95	85	7	326	29	9	24	36	1.87
1150297--1150646	174	2.0	173	95	1	610	48	2	5	44	1.38
1150746--1150804	12	5.1	12	87	2	68	42	1	0	55	1.09
1150760--1150807	3	16.3	3	86	4	71	37	2	0	60	1.09
1152038--1152070	2	17.0	2	93	6	59	48	0	0	51	1.00
1153378--1153458	39	2.1	38	97	2	153	25	17	19	37	1.94
1160110--1160365	125	2.0	125	90	0	395	32	14	27	25	1.95
1161630--1161788	37	4.3	37	76	7	137	37	20	16	26	1.93
1161630--1161756	37	3.4	37	82	5	141	38	19	14	27	1.90
1162166--1162539	56	6.8	56	82	3	320	34	16	23	25	1.96
1162500--1162806	55	6.2	45	77	16	254	30	14	25	29	1.95
1162590--1163115	55	9.7	55	87	2	658	29	14	25	29	1.95
1163290--1163360	14	5.6	12	82	14	56	43	1	0	54	1.08
1163307--1163403	3	32.7	3	76	10	92	38	3	1	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1169968--1170004	16	2.3	16	100	0	74	18	21	18	40	1.91
1172103--1172196	37	2.5	37	73	10	84	38	10	10	40	1.75
1176682--1176721	17	2.4	17	87	4	55	0	15	0	85	0.61
1176696--1176721	11	2.4	11	100	0	52	0	7	0	92	0.39
1187074--1187409	168	2.0	168	98	1	656	33	10	19	37	1.85
1187729--1187765	17	2.1	18	90	5	58	43	5	13	37	1.67
1188332--1188359	13	2.2	13	100	0	56	35	21	14	28	1.92
1189640--1189972	43	7.8	43	92	1	537	16	26	25	31	1.97
1189640--1189972	85	3.9	85	92	1	533	16	26	25	31	1.97
1190947--1191020	28	2.8	25	81	18	73	55	5	2	36	1.37
1191000--1191061	26	2.4	25	84	7	81	56	3	0	40	1.15
1201026--1201058	2	16.5	2	100	0	66	51	0	0	48	1.00
1201224--1201252	2	14.5	2	100	0	58	48	0	0	51	1.00
1201598--1201646	22	2.2	23	82	10	57	40	2	4	53	1.32
1201777--1201826	25	2.0	26	88	4	75	38	10	10	42	1.72
1209026--1209082	15	3.7	15	79	9	69	19	28	31	21	1.97
1209014--1209082	32	2.2	32	94	0	120	20	27	30	21	1.98
1209014--1209082	15	4.3	17	75	10	65	20	27	30	21	1.98
1209263--1209287	9	2.8	9	100	0	50	88	0	0	12	0.53
1211436--1211485	21	2.4	21	82	0	64	20	18	22	40	1.92
1217439--1217516	41	1.9	41	89	5	122	24	7	16	51	1.71
1218212--1218290	35	2.3	35	80	12	92	54	10	8	26	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1218501--1218527	12	2.2	12	100	0	54	7	33	25	33	1.84
1220585--1220630	18	2.6	17	86	10	65	60	2	4	32	1.28
1221384--1221956	112	5.1	112	93	0	934	46	14	14	24	1.83
1221904--1222236	162	2.1	162	94	0	585	42	12	16	28	1.84
1222882--1222929	23	2.1	23	92	0	78	37	18	8	35	1.81
1223364--1223408	21	2.1	21	95	0	81	17	22	17	42	1.89
1223402--1223528	20	6.3	20	96	0	218	39	21	19	19	1.93
1223727--1223788	22	2.8	22	92	0	106	25	37	14	22	1.92
1224124--1224208	20	4.3	20	83	1	82	14	17	23	44	1.85
1224174--1224214	20	2.0	20	90	0	64	12	12	17	58	1.63

Tables:   1   2   3   4   5   6   7