genome.fa.s7925.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007925.1 Hibiscus syriacus cultivar Beakdansim tig00110331_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1316088

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 790 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224178--1224221	20	2.2	20	83	0	52	13	11	18	56	1.66
1226084--1226297	40	5.9	40	72	16	148	42	21	19	17	1.89
1226084--1226259	20	9.5	20	78	17	148	42	21	18	17	1.90
1226318--1226412	20	4.8	20	90	1	120	22	18	21	37	1.94
1226323--1226412	40	2.2	40	90	0	135	21	20	22	36	1.95
1226326--1226422	20	4.8	20	85	2	70	20	18	20	40	1.92
1226896--1227000	21	5.0	21	74	3	95	20	37	19	22	1.95
1226893--1227003	42	2.6	42	78	5	118	20	37	18	22	1.94
1228383--1228418	14	2.6	14	90	0	54	30	0	22	47	1.52
1228544--1228597	14	3.5	14	73	22	54	44	20	24	11	1.83
1228524--1228617	33	2.8	33	90	3	134	43	19	23	13	1.86
1228634--1228729	33	2.8	33	87	3	120	15	21	18	43	1.87
1228701--1228794	20	4.7	19	80	12	109	18	19	25	37	1.94
1228701--1228794	40	2.3	40	87	3	145	18	19	25	37	1.94
1230999--1231025	12	2.2	12	100	0	54	0	25	0	74	0.83
1231200--1231253	24	2.2	24	90	0	81	42	20	16	20	1.89
1232095--1232161	20	3.3	20	95	0	116	22	19	26	31	1.98
1232148--1232278	20	6.7	20	78	6	151	21	20	21	36	1.95
1232150--1232240	37	2.4	39	87	5	123	20	20	21	36	1.95
1232268--1232320	21	2.5	21	81	6	63	37	16	22	22	1.94
1238543--1238588	24	2.0	22	83	8	56	41	4	0	54	1.20
1240767--1240949	89	2.0	92	94	4	327	46	20	10	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1241958--1242042	14	5.9	14	74	14	57	31	5	29	32	1.81
1242000--1242067	16	4.4	16	74	7	59	33	4	29	32	1.77
1241970--1242083	46	2.5	46	94	0	192	33	5	29	31	1.80
1242187--1242251	29	2.2	29	83	0	76	53	4	13	27	1.59
1243580--1243612	16	2.1	16	100	0	66	24	12	24	39	1.89
1243603--1243764	40	4.0	41	77	10	163	18	19	30	31	1.96
1243596--1243760	83	2.0	83	93	0	285	18	18	30	32	1.95
1247262--1247313	21	2.5	21	84	6	70	3	17	1	76	1.02
1248193--1248217	12	2.1	12	100	0	50	68	0	8	24	1.16
1249859--1249994	65	2.1	64	90	4	193	29	19	21	30	1.97
1250690--1250727	16	2.4	16	91	8	60	63	21	0	15	1.31
1253501--1253534	2	17.0	2	100	0	68	50	0	0	50	1.00
1253538--1253573	12	3.0	12	87	0	54	30	8	25	36	1.85
1253718--1253750	15	2.2	15	94	0	57	15	21	33	30	1.94
1260167--1260296	65	2.0	64	85	7	174	31	17	22	28	1.97
1262521--1262574	21	2.5	22	87	6	74	72	0	7	20	1.08
1263396--1263460	29	2.2	29	86	0	85	50	4	15	29	1.64
1264634--1264693	29	2.0	31	90	6	97	35	6	16	41	1.75
1264758--1264804	19	2.5	19	92	0	76	40	8	12	38	1.74
1264911--1264952	21	2.0	21	86	9	59	23	19	28	28	1.98
1267584--1267630	19	2.5	19	92	0	76	40	8	12	38	1.74
1267736--1267777	21	2.0	21	90	0	66	26	21	26	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1267806--1267845	20	1.9	21	85	10	55	37	37	10	15	1.80
1273009--1273077	36	1.9	36	96	0	129	30	13	18	37	1.89
1275226--1275294	34	2.0	34	100	0	138	26	26	18	28	1.98
1276881--1276926	21	2.2	21	85	14	60	52	0	0	47	1.00
1277899--1277960	32	2.0	31	81	12	74	53	4	0	41	1.22
1278166--1278478	148	2.1	151	83	5	404	42	11	13	32	1.80
1278166--1278497	75	4.5	74	82	8	386	41	12	13	33	1.81
1278503--1278689	98	1.9	98	91	0	302	37	13	16	33	1.87
1278396--1278617	121	1.8	121	89	3	349	39	14	14	31	1.87
1278592--1278638	23	2.0	23	87	0	67	34	17	14	34	1.90
1279298--1279478	98	1.9	98	88	3	249	36	13	9	40	1.77
1280709--1280758	18	2.6	19	78	6	57	48	6	4	42	1.46
1281748--1281797	25	2.0	26	84	7	68	54	12	6	28	1.60
1282222--1282288	26	2.6	26	100	0	134	23	23	31	20	1.98
1283959--1284548	55	10.7	55	92	2	877	28	25	15	31	1.96
1285549--1285598	9	5.6	9	77	17	50	12	8	0	80	0.92
1297342--1297391	25	2.0	26	84	7	68	54	12	6	28	1.60
1297813--1297879	26	2.6	26	100	0	134	23	23	31	20	1.98
1299998--1300044	24	2.0	24	86	0	67	51	0	2	46	1.13
1300650--1300786	73	1.9	73	93	3	240	44	6	5	43	1.52
1301161--1301223	32	2.0	32	83	0	81	20	33	25	20	1.97
1304466--1305185	83	8.7	81	80	6	591	34	17	18	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1304464--1305185	250	2.9	247	83	4	848	34	17	18	30	1.94
1304463--1305185	166	4.4	164	81	5	751	34	17	18	30	1.94
1305151--1305224	38	2.0	37	89	2	112	43	10	20	25	1.84
1306062--1306112	26	2.0	26	84	0	66	60	17	1	19	1.45

Tables:   1   2   3   4   5   6   7

The End!