genome.fa.s8003.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008003.1 Hibiscus syriacus cultivar Beakdansim tig00110462_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3297763

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3142397--3142576	94	1.9	93	97	1	342	38	16	9	35	1.81
3142510--3142642	26	5.0	26	72	13	117	36	17	10	36	1.84
3142487--3142658	81	2.1	80	96	1	317	37	16	9	37	1.81
3142778--3142934	66	2.3	66	78	9	176	42	12	6	39	1.68
3145198--3145233	18	2.0	18	94	0	63	8	0	69	22	1.15
3149808--3149860	18	2.9	17	78	10	61	22	18	30	28	1.98
3152090--3152156	33	2.0	33	100	0	134	25	17	26	29	1.98
3153338--3153477	68	2.1	68	97	0	262	49	4	18	27	1.66
3153334--3153445	35	3.3	35	62	22	83	50	4	17	26	1.65
3155084--3155198	42	2.7	43	95	2	207	19	18	18	44	1.87
3155387--3155436	21	2.3	23	86	10	70	46	0	0	54	1.00
3155370--3155432	23	2.6	25	78	19	71	50	0	0	49	1.00
3155406--3155472	30	2.2	30	84	10	84	47	1	0	50	1.10
3155387--3155447	21	2.8	23	81	18	69	45	0	0	54	1.00
3155418--3155558	28	5.0	28	68	21	98	45	1	1	51	1.18
3155752--3155801	20	2.5	20	93	0	82	36	12	8	44	1.71
3155784--3155869	15	5.9	14	77	9	66	33	18	6	40	1.78
3155752--3155810	20	3.0	20	82	5	66	35	13	6	44	1.71
3155800--3155864	15	4.4	15	86	3	96	38	20	6	35	1.77
3155784--3155849	29	2.3	29	94	5	116	34	16	7	40	1.77
3159513--3160361	424	2.0	424	98	0	1626	28	23	19	28	1.98
3165946--3166034	2	44.5	2	100	0	178	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3169087--3169158	2	36.0	2	100	0	144	50	0	0	50	1.00
3169655--3169732	21	3.5	21	73	21	77	60	5	6	28	1.43
3174709--3174788	40	2.0	40	100	0	160	30	20	15	35	1.93
3178172--3178216	22	2.0	22	87	8	65	35	0	6	57	1.25
3178334--3178373	21	2.0	21	90	5	64	42	5	0	52	1.23
3194811--3194866	2	30.0	2	86	13	84	53	0	0	46	1.00
3194811--3194866	15	3.8	16	86	13	84	53	0	0	46	1.00
3194811--3194865	19	2.9	19	94	5	94	54	0	0	45	0.99
3196870--3196913	19	2.4	19	88	3	63	43	0	4	52	1.22
3203810--3203871	21	3.1	20	76	19	67	54	1	9	33	1.43
3222916--3222940	12	2.1	12	100	0	50	60	0	16	24	1.36
3227447--3227518	29	2.4	30	88	2	101	16	18	30	34	1.93
3229741--3229805	31	2.1	31	85	5	87	21	20	23	35	1.96
3229791--3229861	28	2.4	30	83	4	83	18	16	28	36	1.93
3232708--3232752	20	2.2	20	96	0	81	35	17	17	28	1.93
3233709--3233769	31	2.0	31	83	6	79	24	21	19	34	1.96
3233747--3233803	29	2.0	29	85	0	78	19	17	29	33	1.95
3233758--3233828	29	2.4	29	86	4	90	18	18	30	32	1.95
3235791--3235826	14	2.6	14	91	4	56	22	5	19	52	1.66
3237465--3237653	77	2.5	77	87	4	267	25	30	22	21	1.99
3243484--3243523	21	1.9	21	89	0	62	25	40	25	10	1.86
3245459--3245509	9	6.2	8	76	19	52	13	0	27	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3245461--3245504	17	2.6	17	85	7	63	13	0	29	56	1.38
3246571--3246648	15	5.2	15	96	0	138	29	33	23	14	1.93
3246743--3246806	29	2.2	29	94	0	110	20	21	15	42	1.89
3246822--3246869	12	4.0	12	81	7	62	37	22	6	33	1.80
3258092--3258144	27	2.0	27	96	3	99	73	7	11	7	1.24
3260078--3260142	27	2.4	27	97	0	121	38	16	21	23	1.93
3261732--3261775	21	2.0	22	86	4	63	27	0	4	68	1.09
3262005--3262117	52	2.2	52	95	4	201	55	1	0	42	1.10
3262005--3262117	28	4.3	24	80	16	111	55	1	0	42	1.10
3262032--3262117	28	3.4	24	83	13	118	55	1	0	43	1.07
3262110--3262161	12	4.4	12	77	18	56	65	3	0	30	1.10
3266313--3266355	20	2.2	20	86	0	59	34	20	13	30	1.92
3295905--3296018	35	3.2	35	85	4	147	34	3	19	42	1.68
3295905--3296018	36	3.2	35	84	7	140	34	3	19	42	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!