genome.fa.s8003.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008003.1 Hibiscus syriacus cultivar Beakdansim tig00110462_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3297763

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870888--871037	19	8.4	19	80	14	194	14	23	17	45	1.84
870869--871037	52	3.2	52	97	0	311	13	24	17	43	1.86
870869--871019	33	4.4	33	71	18	137	13	25	17	43	1.85
871144--871180	14	2.6	14	91	0	65	45	21	0	32	1.52
873106--873171	19	3.4	19	85	2	78	45	27	16	10	1.80
873143--873235	33	2.8	33	95	0	168	47	21	20	10	1.80
873162--873218	14	3.7	14	77	20	60	45	22	21	10	1.82
873122--873240	19	6.8	19	74	19	107	46	22	20	10	1.81
873236--873364	19	7.3	19	73	17	116	7	17	27	47	1.75
873236--873327	33	2.8	33	91	3	141	7	18	27	46	1.76
873412--873971	93	6.1	93	98	0	1090	45	19	12	21	1.83
875678--875734	14	3.7	14	75	20	60	43	22	24	8	1.81
875670--875751	33	2.5	33	100	0	164	47	19	23	9	1.79
875692--875756	19	3.7	19	74	19	77	44	21	23	10	1.83
875768--875857	14	5.7	14	72	23	72	8	24	23	43	1.82
875752--875864	33	3.4	33	95	0	199	8	22	23	46	1.79
875782--875843	19	3.5	19	72	20	71	9	22	24	43	1.83
875956--876026	33	2.2	33	92	0	115	47	18	22	11	1.80
876208--876262	22	2.5	22	81	0	74	20	16	40	23	1.91
876409--876562	20	7.7	20	81	7	168	18	18	26	37	1.93
876408--876562	40	3.8	40	82	4	186	18	18	26	37	1.93
876549--876631	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
876529--876627	42	2.4	43	77	11	100	21	18	23	37	1.94
880221--880256	14	2.6	14	100	0	72	25	0	16	58	1.38
880528--880565	2	19.0	2	100	0	76	50	0	0	50	1.00
881918--881956	2	19.0	2	94	5	69	48	0	2	48	1.15
881915--881964	8	7.0	7	84	11	50	50	0	4	46	1.20
886838--886897	21	3.3	18	72	17	52	50	0	1	48	1.11
886828--886920	40	2.4	39	84	10	111	39	1	2	56	1.18
896285--896361	33	2.3	34	82	6	86	45	9	3	41	1.54
909948--909997	26	1.9	26	84	8	66	48	2	2	48	1.24
909994--910728	340	2.2	334	89	5	1137	43	6	5	43	1.54
920518--920567	26	1.9	26	84	8	66	48	2	2	48	1.24
920564--921299	341	2.2	334	90	4	1146	43	6	5	43	1.54
928787--928864	24	3.2	24	79	12	88	16	14	20	48	1.80
928796--928827	14	2.3	14	94	0	55	9	15	25	50	1.74
928797--928871	24	3.1	23	84	7	96	14	12	20	53	1.72
929590--929644	16	3.4	16	89	0	92	9	14	21	54	1.68
941104--941216	60	1.9	60	88	3	174	36	15	15	31	1.90
941488--941515	2	14.0	2	100	0	56	50	0	0	50	1.00
946634--946730	20	4.8	20	79	2	95	14	18	23	43	1.87
946723--946802	22	3.4	22	75	18	88	18	17	25	38	1.92
946702--946808	22	4.7	22	70	18	76	16	17	22	42	1.88
947437--947461	6	4.2	6	100	0	50	0	16	48	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
953524--953566	20	2.2	20	100	0	86	37	13	20	27	1.91
953749--953785	18	2.1	18	94	0	65	35	37	8	18	1.81
958253--958299	2	23.5	2	100	0	94	51	0	0	48	1.00
962424--962514	45	2.0	45	83	8	114	35	13	17	34	1.89
964046--964094	22	2.2	22	85	0	62	42	2	6	48	1.39
983512--983569	29	2.0	29	89	0	89	13	36	27	22	1.92
983609--983679	10	6.7	10	73	12	61	25	36	26	11	1.90
983626--983679	20	2.7	20	97	0	99	24	35	29	11	1.90
983666--983698	14	2.4	14	94	0	57	24	39	30	6	1.79
983626--983679	10	5.4	10	79	16	67	24	35	29	11	1.90
983690--983764	33	2.3	33	90	4	116	26	24	40	9	1.85
983768--983823	29	1.9	29	92	0	94	21	30	35	12	1.90
985443--985742	108	2.8	108	82	4	327	41	11	11	36	1.77
986310--986544	76	3.1	74	86	3	317	33	12	10	44	1.76
986462--986643	99	1.8	100	82	3	233	35	10	11	42	1.76
986386--986736	174	2.0	176	85	3	476	35	11	11	41	1.77
986297--986902	258	2.4	251	82	5	700	36	11	11	41	1.77
986735--987103	100	3.7	100	84	2	463	36	11	11	40	1.77
986735--987103	200	1.8	200	85	2	517	36	11	11	40	1.77
999033--999074	21	2.0	20	86	4	57	40	7	14	38	1.73
1005617--1005642	2	13.0	2	100	0	52	50	0	0	50	1.00
1006827--1006864	20	1.9	20	94	0	67	23	21	21	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006872--1007032	64	2.5	63	81	6	171	24	24	17	33	1.96
1007003--1007051	19	2.6	19	93	0	80	24	32	14	28	1.94
1015795--1015825	12	2.6	12	94	0	53	45	3	0	51	1.17
1015812--1016133	22	14.6	22	89	1	484	41	0	10	48	1.37
1016157--1016215	31	1.9	31	96	0	109	44	6	5	44	1.52
1020664--1020845	91	2.0	90	94	1	319	33	13	12	40	1.82
1023392--1023437	3	15.3	3	100	0	92	32	0	0	67	0.91
1024544--1024595	4	13.0	4	91	0	77	50	19	0	30	1.48
1024545--1024607	12	5.2	12	90	0	81	50	14	0	34	1.43
1027862--1027886	8	3.1	8	100	0	50	88	0	0	12	0.53
1029649--1029679	2	15.5	2	93	0	53	3	48	0	48	1.17
1031024--1031057	2	17.0	2	100	0	68	50	0	0	50	1.00
1044246--1044309	29	2.2	29	88	5	94	31	14	7	46	1.72
1046200--1046256	26	2.2	26	100	0	114	40	26	19	14	1.89
1055147--1055187	21	2.0	21	85	4	57	26	24	7	41	1.81
1059789--1059841	21	2.5	21	81	6	72	20	26	18	33	1.96
1059831--1059882	20	2.5	21	87	3	70	40	17	21	21	1.91
1059831--1059904	20	3.7	20	80	8	69	37	18	20	22	1.94
1059871--1059923	20	2.6	21	88	8	83	30	24	18	26	1.98
1060466--1060510	19	2.4	19	80	0	54	53	26	11	8	1.65
1060515--1060651	19	7.6	19	70	18	96	13	21	19	45	1.84
1060528--1060626	33	3.0	33	90	1	153	12	23	22	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1060591--1060649	20	3.0	20	84	0	73	13	22	18	45	1.84
1062796--1062862	21	3.2	21	66	6	55	23	35	20	19	1.95
1062744--1062862	42	2.8	42	81	5	107	22	36	18	22	1.95
1064358--1064414	14	3.7	14	75	20	60	43	22	24	8	1.81
1064340--1064420	33	2.5	33	97	0	153	44	20	23	11	1.84
1064340--1064400	19	3.5	19	74	21	69	44	21	22	11	1.84
1064430--1064555	33	3.8	32	89	8	200	14	23	19	42	1.88
1064431--1064555	19	7.4	19	66	24	100	14	23	19	43	1.87
1064422--1064554	66	2.0	66	97	0	248	15	22	19	42	1.89
1066847--1066871	12	2.1	12	100	0	50	0	28	0	72	0.86
1067046--1067099	24	2.2	24	90	0	81	40	20	16	22	1.91
1067884--1067935	21	2.5	21	87	3	70	38	17	23	21	1.93
1067962--1068011	20	2.5	20	76	0	64	38	20	18	24	1.93
1068221--1068312	20	4.6	20	78	5	105	41	21	22	14	1.89
1068326--1068396	33	2.2	33	81	0	79	21	19	19	39	1.93
1068339--1068397	14	3.8	16	76	24	63	13	22	18	45	1.84
1068383--1068427	20	2.2	20	84	4	54	13	13	22	51	1.75
1068391--1068428	20	1.9	20	94	0	67	13	10	28	47	1.76
1070424--1070479	20	2.8	20	81	2	60	41	23	19	16	1.90
1070468--1070585	33	3.6	33	89	3	177	47	22	17	12	1.81
1070494--1070548	19	3.2	19	68	24	57	52	16	18	12	1.74
1070481--1070567	14	5.6	14	67	22	50	49	20	17	12	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1070581--1070664	19	4.6	19	74	15	70	15	22	20	41	1.89
1070629--1070672	20	2.3	19	92	4	70	20	25	18	36	1.95
1071165--1071209	18	2.5	18	88	0	72	13	15	44	26	1.83
1072529--1072566	20	1.9	20	88	0	58	50	21	15	13	1.78
1072850--1072893	22	2.0	22	95	0	79	18	15	45	20	1.85
1073061--1073191	20	6.4	20	80	7	113	24	17	24	33	1.96
1073061--1073198	61	2.3	61	84	0	186	24	16	23	34	1.95
1073081--1073216	61	2.2	61	80	2	148	23	19	24	33	1.97
1077796--1077914	39	3.1	39	97	0	220	17	26	20	35	1.95
1084223--1084256	16	2.1	16	88	0	50	32	11	23	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14