genome.fa.s8185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008185.1 Hibiscus syriacus cultivar Beakdansim tig00110788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3563405

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  1  of  16  ( 1911 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190--214	12	2.1	12	100	0	50	72	0	28	0	0.86
2511--2788	19	15.4	19	83	12	363	46	17	20	15	1.84
2511--2820	109	2.9	109	89	6	474	46	18	20	15	1.84
2817--2918	19	5.6	19	85	12	151	14	23	17	44	1.86
3025--3061	14	2.6	14	91	0	65	45	21	0	32	1.52
5016--5072	14	3.7	14	77	20	60	45	22	21	10	1.82
4997--5089	33	2.8	33	95	0	168	47	21	20	10	1.80
4960--5094	19	7.6	19	76	16	128	45	23	19	11	1.82
5090--5218	19	7.3	19	75	17	125	8	17	28	45	1.77
5090--5181	33	2.8	33	93	3	150	7	18	28	45	1.76
5261--5731	92	5.1	93	98	1	921	46	19	12	22	1.83
7425--7514	14	5.7	14	74	23	81	42	23	25	8	1.83
7417--7531	33	3.5	33	95	0	212	45	20	24	9	1.81
7424--7536	19	6.8	18	72	23	88	43	22	24	9	1.83
7548--7602	14	3.6	14	73	21	56	9	27	23	40	1.85
7723--7793	33	2.2	33	92	0	115	47	18	22	11	1.80
7974--8028	22	2.5	22	81	0	74	20	16	40	23	1.91
8174--8367	20	9.6	20	82	5	212	19	19	25	36	1.95
8174--8367	60	3.2	60	82	0	244	19	19	25	36	1.95
8360--8436	21	3.7	20	70	13	57	27	16	23	32	1.96
8422--8473	20	2.6	20	96	0	95	21	13	26	38	1.90
8721--8757	12	3.2	12	96	3	67	43	8	8	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10696--10741	22	2.1	22	88	8	67	34	4	2	58	1.30
11491--11523	2	17.5	2	87	12	52	48	0	0	51	1.00
11487--11522	13	2.8	14	80	20	51	47	0	0	52	1.00
11491--11523	15	2.2	15	94	0	57	48	0	0	51	1.00
11488--11524	11	3.4	11	89	10	58	45	0	0	54	1.00
18520--18594	29	2.5	30	82	6	80	32	1	2	64	1.16
20764--20810	13	3.6	13	82	0	58	17	2	12	68	1.31
24982--25130	74	2.0	74	86	0	208	39	15	13	31	1.86
25138--25294	20	7.8	20	71	6	84	38	25	16	19	1.92
25281--25454	20	8.6	20	81	5	199	34	25	20	20	1.96
25281--25454	60	2.9	60	85	0	240	34	25	20	20	1.96
25837--25907	33	2.2	33	94	0	124	11	23	16	47	1.79
25987--26090	19	5.6	19	74	15	92	43	21	23	12	1.86
26045--26106	14	4.1	14	73	18	52	45	22	22	9	1.81
25999--26117	33	3.4	33	86	6	148	44	22	21	10	1.83
26135--26224	14	5.7	14	72	23	72	8	24	23	43	1.82
26118--26232	33	3.5	33	96	0	212	9	22	20	46	1.79
26113--26210	19	5.7	19	69	22	81	10	22	22	44	1.82
27928--28394	93	5.1	93	97	1	886	22	12	19	45	1.83
27928--28394	185	2.5	185	97	0	891	22	12	19	45	1.83
28442--28570	19	7.3	19	74	17	107	45	27	17	8	1.78
28458--28570	19	6.5	19	74	19	120	46	28	17	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28478--28570	33	2.8	32	91	4	150	46	27	18	7	1.76
28458--28570	52	2.2	51	81	9	131	46	28	17	7	1.74
28566--28700	19	7.6	19	75	16	128	11	19	23	45	1.82
28588--28644	14	3.7	14	77	20	60	10	21	22	45	1.82
28571--28663	33	2.8	33	95	0	168	10	20	21	47	1.80
30623--30658	14	2.6	14	95	0	63	33	0	22	44	1.53
30765--30866	19	5.6	19	84	13	151	44	17	23	14	1.86
30895--31253	19	20.4	19	80	16	436	13	21	18	46	1.83
30912--31253	52	6.6	52	87	9	186	13	21	18	46	1.84
30895--31253	71	5.1	71	80	16	428	13	21	18	46	1.83
30914--31253	33	9.8	33	77	14	262	13	21	18	46	1.83
33534--33558	12	2.1	12	100	0	50	0	28	0	72	0.86
33733--33779	24	2.0	24	87	8	69	38	21	14	25	1.92
34461--34670	20	10.5	20	84	2	206	20	17	24	37	1.94
34637--34734	20	4.8	20	77	3	79	21	18	23	36	1.95
34637--34793	41	3.9	41	70	14	110	18	17	25	38	1.93
34914--34958	21	2.2	21	88	4	65	26	24	15	33	1.95
34967--35028	20	3.1	20	75	9	72	29	20	22	27	1.99
34964--35048	40	2.1	40	84	4	109	31	21	21	25	1.98
37966--37999	17	1.9	18	88	5	52	73	8	2	14	1.19
43102--43142	17	2.6	15	82	14	55	41	12	12	34	1.80
43105--43140	17	2.1	17	94	0	63	41	11	8	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43564--43620	21	2.7	21	91	0	96	24	24	28	22	2.00
44229--44327	33	3.0	33	94	1	164	45	15	7	32	1.73
44322--44363	21	2.0	21	95	0	75	47	7	14	30	1.71
46660--46705	12	3.6	12	81	16	56	17	19	17	45	1.85
46659--46698	15	2.9	14	85	14	57	20	17	15	47	1.83
48929--49014	43	2.0	43	95	0	154	43	16	4	36	1.69
52046--52144	20	5.0	21	75	9	91	33	24	14	28	1.94
53049--53102	24	2.2	24	83	0	63	25	14	18	40	1.89
55724--55771	20	2.4	20	92	0	78	20	18	25	35	1.95
55837--55886	25	2.0	25	92	0	82	28	8	20	44	1.79
56274--56310	18	2.1	18	89	0	56	32	5	10	51	1.60
56266--56318	24	2.2	24	86	0	70	35	3	13	47	1.61
56586--56672	39	2.2	39	95	0	156	47	19	14	18	1.83
58222--58317	21	4.6	21	74	8	88	22	18	35	22	1.96
58222--58317	42	2.3	42	80	7	113	22	18	35	22	1.96
60740--60787	22	2.2	22	92	0	78	27	14	37	20	1.92
60888--60992	20	5.2	20	75	11	99	20	15	22	40	1.90
64977--65041	31	2.1	30	88	2	94	50	4	1	43	1.32
65481--65531	22	2.3	22	89	0	84	25	31	0	43	1.55
84589--84683	16	6.2	15	73	16	63	71	2	20	6	1.18
84563--84682	44	2.8	43	76	18	108	71	1	20	5	1.15
84649--84683	17	2.1	16	94	5	61	77	0	17	5	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84622--84688	15	4.7	15	72	20	54	76	0	17	5	0.99
85964--86497	55	9.7	55	88	3	722	28	17	23	30	1.97
94008--94152	79	1.8	78	83	4	193	40	8	13	37	1.75
94165--94199	16	2.3	15	95	5	61	42	0	5	51	1.25
105525--105654	69	1.9	69	93	0	224	37	9	10	43	1.70
107272--107305	17	1.9	17	88	5	50	58	5	2	32	1.37
117434--117483	24	2.1	24	92	0	82	62	6	4	28	1.37
117713--117757	22	2.0	22	87	8	65	33	8	15	42	1.78
120713--120771	29	2.0	29	100	0	118	49	13	13	23	1.78
125664--125722	29	2.0	29	100	0	118	23	13	13	49	1.78
130203--130294	23	4.0	23	78	5	105	28	22	27	21	1.99
130310--130624	103	3.1	103	96	0	569	36	23	13	26	1.92
136066--136151	3	28.7	3	95	4	156	68	0	0	31	0.90
137034--137092	24	2.5	24	100	0	118	22	25	20	32	1.98
140137--140228	23	4.0	23	89	0	139	27	26	27	19	1.99
140251--140557	103	3.0	103	95	0	528	36	23	13	27	1.92
142242--142286	21	2.1	21	87	0	63	15	24	28	31	1.96
145298--145366	23	3.0	23	89	0	111	24	26	27	21	1.99
145389--145702	103	3.0	103	94	0	529	35	22	13	28	1.92
147385--147450	21	3.1	21	93	0	105	16	25	27	30	1.97
150644--150675	3	10.7	3	93	0	55	68	3	0	28	1.04
150894--150954	23	2.7	23	84	0	86	27	24	26	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159059--159113	20	2.7	20	75	16	58	36	5	5	52	1.48
159583--159657	31	2.4	31	90	2	114	41	6	6	45	1.57
160910--161050	70	2.0	70	94	0	246	24	23	16	35	1.95
166080--166109	15	2.1	14	93	6	51	20	40	16	23	1.91
166867--166909	3	14.7	3	95	4	79	32	0	0	67	0.91
167207--167259	21	2.5	21	75	6	63	20	26	16	35	1.94
167249--167321	21	3.5	21	88	1	94	38	17	21	21	1.93
167330--167373	21	2.1	21	100	0	88	47	22	13	15	1.81
167361--167433	20	3.7	20	79	0	92	30	26	16	27	1.97
169269--169316	18	2.7	18	90	0	78	27	43	12	16	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16