genome.fa.s8185.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008185.1 Hibiscus syriacus cultivar Beakdansim tig00110788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3563405

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  8  of  16  ( 1911 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1406303--1406469	33	4.8	33	80	9	181	46	18	20	14	1.84
1406345--1406434	20	4.9	19	71	15	73	45	18	18	16	1.86
1406479--1406544	19	3.7	19	71	19	70	12	22	18	46	1.81
1406651--1406687	14	2.6	14	91	0	65	45	21	0	32	1.52
1408076--1408155	42	1.9	42	86	0	115	25	17	36	21	1.95
1408600--1408689	19	4.9	19	75	15	91	11	21	21	46	1.81
1408753--1409132	94	4.1	94	94	1	638	47	18	12	22	1.81
1410830--1410885	20	2.8	20	84	10	87	39	21	25	14	1.91
1410821--1410952	19	7.1	19	82	11	148	43	20	23	12	1.85
1410948--1411027	33	2.4	33	87	0	106	12	18	20	48	1.80
1410948--1411006	19	3.4	18	71	22	54	11	16	23	47	1.80
1411008--1411083	20	3.8	20	77	5	66	17	17	14	51	1.77
1411644--1411815	20	8.5	20	82	7	177	19	19	23	37	1.94
1411644--1411815	40	4.2	40	88	5	222	19	19	23	37	1.94
1411665--1411815	60	2.5	60	90	1	230	20	19	23	36	1.95
1411665--1411857	60	3.2	61	85	5	207	20	19	23	37	1.94
1411806--1411875	20	3.5	20	78	7	79	17	18	24	40	1.91
1412750--1412783	16	2.1	16	88	0	50	50	0	2	47	1.16
1412825--1412858	16	2.0	18	88	11	54	26	2	5	64	1.30
1413352--1413398	23	2.1	23	84	7	62	34	14	14	36	1.88
1413325--1413572	130	1.9	130	91	0	406	35	12	15	36	1.86
1413969--1414045	35	2.2	35	92	0	127	36	1	23	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414295--1414370	35	2.2	35	88	4	109	40	1	18	39	1.59
1413941--1414594	326	2.0	326	96	0	1218	34	10	19	34	1.86
1417540--1417678	64	2.2	64	80	6	147	28	20	22	28	1.99
1418750--1418793	21	2.1	21	82	0	52	36	15	38	9	1.80
1420342--1420436	21	4.4	21	73	13	70	26	22	24	27	2.00
1422959--1423170	65	3.3	62	79	10	212	26	16	26	30	1.97
1423002--1423039	19	2.0	20	94	5	69	15	21	31	31	1.94
1423069--1423119	19	2.7	19	85	8	70	25	15	35	23	1.94
1423338--1423377	20	2.0	21	85	14	57	45	7	5	42	1.54
1424171--1424214	21	2.1	21	91	0	70	40	15	36	6	1.74
1429657--1429696	21	1.9	21	85	10	55	35	10	2	52	1.48
1431623--1431785	65	2.5	64	84	3	220	26	15	26	30	1.96
1431733--1431783	19	2.7	19	85	8	70	25	15	35	23	1.94
1431994--1432033	20	2.0	21	85	14	57	45	7	5	42	1.54
1435791--1436000	65	3.3	63	80	9	212	26	17	24	31	1.97
1437864--1437969	53	2.0	53	100	0	212	28	20	30	20	1.98
1438720--1438749	11	2.7	11	100	0	60	56	0	10	33	1.32
1441930--1441970	16	2.6	16	88	3	57	39	9	19	31	1.84
1442543--1442593	21	2.4	21	83	0	57	56	1	3	37	1.29
1453677--1453709	16	2.1	16	88	5	50	39	0	0	60	0.97
1455368--1455417	20	2.5	20	96	0	91	62	8	2	28	1.35
1458851--1458880	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1463045--1463074	2	15.0	2	100	0	60	50	0	0	50	1.00
1465148--1465265	32	3.7	31	80	11	150	33	18	17	30	1.95
1465128--1465284	63	2.5	63	96	0	287	33	17	18	30	1.94
1465135--1465318	31	5.9	31	77	11	187	30	18	19	30	1.96
1465305--1465375	30	2.4	30	85	0	88	21	22	25	30	1.98
1483698--1483728	2	15.5	2	100	0	62	51	0	0	48	1.00
1483728--1483756	2	14.5	2	100	0	58	51	0	48	0	1.00
1497016--1497062	21	2.2	21	81	7	60	51	27	0	21	1.48
1497122--1497173	21	2.5	21	96	0	95	55	23	0	21	1.43
1497122--1497180	21	2.8	21	92	0	82	54	25	0	20	1.45
1497122--1497187	21	3.1	21	88	0	69	54	24	0	21	1.45
1513935--1513982	20	2.4	19	78	18	53	47	0	0	52	1.00
1513941--1513980	21	1.9	21	85	10	55	47	0	0	52	1.00
1517433--1517462	2	15.0	2	100	0	60	50	0	0	50	1.00
1521270--1521404	59	2.3	59	81	3	146	44	5	17	32	1.71
1521305--1521418	59	1.9	59	83	0	147	45	7	15	31	1.73
1528922--1528994	37	2.0	38	91	5	123	30	4	20	45	1.70
1534470--1534527	29	2.0	29	100	0	116	20	6	34	37	1.80
1542949--1542974	13	2.0	13	100	0	52	7	0	23	69	1.14
1544860--1544909	26	1.9	26	84	8	66	52	4	2	42	1.31
1554196--1554266	36	2.0	36	94	0	124	39	9	14	36	1.79
1569084--1569162	32	2.5	32	85	0	95	46	3	1	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1576456--1576577	62	2.0	62	100	0	244	40	18	16	24	1.90
1583492--1583520	2	14.5	2	100	0	58	48	0	0	51	1.00
1585669--1585706	20	1.9	20	89	10	60	65	7	2	23	1.32
1591195--1591352	21	7.8	20	72	7	86	39	24	16	19	1.92
1591319--1591512	20	9.6	20	81	5	221	35	25	19	19	1.95
1591319--1591512	60	3.2	60	83	0	253	35	25	19	19	1.95
1591894--1591964	33	2.2	33	89	0	106	11	23	16	47	1.79
1592044--1592149	21	5.6	20	70	16	91	45	18	25	10	1.81
1592042--1592120	21	3.8	21	79	12	92	45	16	26	11	1.81
1592037--1592153	41	3.1	38	79	14	136	46	17	26	10	1.80
1592107--1592160	14	3.5	14	73	22	54	42	24	25	7	1.80
1592096--1592165	33	2.1	33	97	0	131	47	20	25	7	1.75
1592102--1592176	33	2.3	33	92	0	123	46	24	22	6	1.75
1592172--1592269	19	5.7	19	70	22	81	10	24	22	42	1.84
1592194--1592283	14	5.7	14	74	23	81	8	25	23	42	1.83
1592177--1592291	33	3.5	33	95	0	212	9	24	20	45	1.81
1593988--1594368	93	4.1	93	98	0	744	22	12	18	45	1.83
1594468--1594524	14	3.7	14	77	20	60	45	22	21	10	1.82
1594449--1594541	33	2.8	33	95	0	168	47	21	20	10	1.80
1594412--1594541	19	7.3	19	76	17	127	46	23	18	10	1.80
1596491--1596526	14	2.6	14	95	0	63	33	0	22	44	1.53
1596633--1596678	20	2.3	20	88	3	67	43	19	19	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1596687--1596854	19	9.6	19	76	18	177	14	23	17	44	1.86
1596693--1596854	33	4.7	33	74	16	159	14	22	17	45	1.85
1596687--1596854	52	3.2	52	97	0	309	14	23	17	44	1.86
1596913--1597010	19	5.4	19	84	13	143	45	17	22	14	1.84
1596913--1597029	53	2.2	53	98	1	227	44	17	23	13	1.85
1599345--1599369	12	2.1	12	100	0	50	0	28	0	72	0.86
1599544--1599590	24	2.0	24	87	8	69	38	21	14	25	1.92
1600273--1600522	20	12.5	20	86	1	250	20	18	24	37	1.94
1600509--1600591	21	4.0	21	73	6	78	25	16	24	33	1.96
1600489--1600587	42	2.4	43	77	11	100	21	18	23	37	1.94
1601272--1601309	19	2.0	19	100	0	76	31	15	0	52	1.43
1607290--1607332	18	2.4	18	88	3	70	27	4	34	32	1.78
1608129--1608197	24	2.9	23	82	6	84	13	10	20	56	1.65
1608927--1609001	10	7.7	10	69	21	61	9	12	21	57	1.62
1608933--1608997	16	4.1	16	95	0	121	7	12	23	56	1.61
1609067--1609099	16	2.1	16	100	0	66	6	12	24	57	1.57
1613710--1613777	34	2.0	34	85	2	93	47	32	7	13	1.70
1613762--1613846	31	2.8	31	75	8	84	38	25	9	25	1.86
1613897--1613963	31	2.2	31	86	5	91	38	20	7	32	1.81
1617341--1617381	19	2.2	19	100	0	82	24	19	0	56	1.42
1619691--1619721	15	2.1	15	94	5	55	64	0	6	29	1.18
1640096--1640292	97	2.0	97	96	0	358	18	22	29	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1642581--1642634	3	18.0	3	100	0	108	33	0	0	66	0.92
1642940--1642981	14	3.1	14	86	3	59	16	0	35	47	1.47
1646208--1646256	19	2.7	17	84	9	53	26	18	30	24	1.98
1646208--1646386	64	2.8	62	80	10	200	26	16	27	29	1.97
1646225--1646416	64	3.0	61	79	10	188	28	16	26	29	1.97
1655186--1655223	16	2.3	16	95	4	67	26	7	28	36	1.84
1665108--1665191	21	4.0	21	73	23	70	73	0	14	11	1.09
1666183--1666981	55	14.9	55	83	7	918	31	15	25	27	1.96
1666183--1666981	107	7.5	108	83	8	849	31	15	25	27	1.96
1666889--1667039	55	2.9	53	80	11	172	30	21	24	23	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16