genome.fa.s8185.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008185.1 Hibiscus syriacus cultivar Beakdansim tig00110788_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3563405

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  2  of  16  ( 1911 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169846--169912	20	3.4	20	81	2	73	38	23	22	14	1.92
169865--169952	33	2.5	34	77	22	101	42	21	22	13	1.88
169885--169966	19	4.6	19	75	17	95	45	21	20	12	1.84
170013--170078	20	3.3	20	95	0	114	15	24	25	34	1.94
170005--170104	20	5.1	19	85	6	83	21	20	25	34	1.97
170005--170098	40	2.4	40	83	5	111	18	21	25	35	1.95
170453--170521	21	3.3	20	74	6	66	24	40	15	18	1.90
170443--170533	41	2.2	42	88	2	139	21	41	15	20	1.89
171942--171980	14	2.8	14	84	0	51	35	0	17	46	1.49
172018--172062	18	2.5	18	88	0	72	37	0	17	44	1.49
172132--172178	14	2.8	17	75	24	55	46	19	21	12	1.82
172454--172550	20	4.8	20	97	0	167	27	20	27	23	1.99
172767--172800	12	2.9	12	86	4	52	17	41	5	35	1.74
173353--173406	24	2.2	24	90	0	81	22	16	20	40	1.91
175915--176041	33	3.8	33	92	0	200	45	17	22	14	1.84
175915--176006	19	5.4	19	68	24	87	46	17	20	15	1.84
176078--176154	31	2.4	33	87	6	106	15	19	18	46	1.84
176254--176287	14	2.4	14	90	9	52	47	20	0	32	1.51
177886--178067	94	2.0	88	90	7	285	46	19	12	21	1.82
179722--179777	20	2.8	19	87	10	85	51	16	19	12	1.75
180357--180411	20	2.7	21	80	5	67	43	16	20	20	1.88
180357--180421	21	3.1	21	80	4	69	40	16	21	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180431--180478	20	2.3	21	85	3	62	25	22	10	41	1.85
180902--180932	15	2.1	14	94	5	53	58	0	6	35	1.24
180925--181135	31	7.0	31	70	19	128	37	2	7	53	1.41
180925--181078	63	2.5	61	81	12	179	38	2	7	51	1.45
180981--181059	10	7.6	10	67	13	52	37	2	5	54	1.36
181054--181109	23	2.6	23	80	8	73	32	3	7	57	1.43
181031--181134	54	2.0	51	86	5	145	34	1	5	57	1.33
186619--186645	14	1.9	14	100	0	54	44	0	0	55	0.99
191766--191863	31	3.2	32	78	8	105	47	5	5	41	1.47
194409--194480	15	4.6	16	74	16	53	41	0	1	56	1.07
194408--194481	32	2.4	31	82	15	91	40	0	1	58	1.07
196175--196222	21	2.3	21	85	0	60	25	39	12	22	1.89
196710--196802	30	3.2	28	82	10	89	52	4	3	39	1.37
196725--196802	30	2.6	32	84	10	101	52	3	3	39	1.38
197182--197658	126	3.8	126	98	0	922	32	20	25	21	1.98
197719--197759	8	5.2	8	82	5	57	36	29	0	34	1.58
200721--200759	12	3.2	12	88	3	60	43	0	0	56	0.99
200768--200825	23	2.6	23	94	5	102	44	12	3	39	1.58
202389--202557	60	2.8	59	85	3	214	43	5	22	27	1.76
208121--208448	164	2.0	164	96	3	608	29	20	19	30	1.97
221682--221820	37	3.6	36	74	18	145	51	4	5	38	1.43
221654--221853	80	2.5	80	97	0	373	50	5	6	38	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224061--224089	2	14.5	2	100	0	58	48	0	0	51	1.00
224429--224489	21	3.2	21	63	29	55	32	4	19	42	1.73
224421--224542	35	3.4	36	86	6	167	33	4	18	43	1.71
225725--225754	15	1.9	16	93	6	53	43	20	30	6	1.77
228937--229019	37	2.3	38	81	8	100	37	4	16	40	1.70
228951--229020	37	1.9	37	88	2	106	35	4	15	44	1.67
230863--230916	26	2.1	26	85	0	72	33	1	9	55	1.42
230923--230988	29	2.3	28	80	14	73	36	3	12	48	1.56
238137--238192	29	1.9	29	81	0	67	33	7	21	37	1.81
240648--240779	11	13.2	10	65	19	53	46	4	2	46	1.35
240663--240772	31	3.6	30	78	9	107	46	4	2	46	1.37
240649--240782	31	4.5	27	67	22	72	45	4	2	47	1.38
240648--240782	62	2.2	60	84	6	166	45	4	2	46	1.38
267341--267401	19	3.2	19	68	9	61	57	4	9	27	1.52
267345--267419	38	2.0	38	92	2	125	56	5	12	26	1.57
272030--272081	25	2.0	25	85	10	70	30	0	0	69	0.89
274789--274840	18	2.6	21	74	22	58	40	0	1	57	1.10
274805--274860	29	1.9	29	92	0	94	42	0	0	57	0.99
274812--274851	21	2.0	20	85	5	53	40	0	0	60	0.97
276380--276439	20	3.1	19	78	4	57	53	1	1	43	1.20
276372--276767	184	2.1	185	92	1	670	43	3	7	45	1.48
277881--277919	18	2.2	18	100	0	78	28	7	5	58	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280307--280357	24	2.0	24	92	7	84	37	1	11	49	1.51
280307--280358	26	2.0	26	88	7	79	38	1	11	48	1.51
282100--282145	19	2.4	19	85	7	58	28	2	2	67	1.14
287542--287677	56	2.4	57	87	6	195	41	22	2	33	1.68
287545--287677	30	4.6	29	81	6	164	40	22	3	33	1.69
291703--291743	20	2.0	20	95	0	73	31	19	19	29	1.96
293897--294029	31	4.2	31	71	4	97	28	28	25	17	1.97
293897--294030	63	2.1	63	81	9	157	28	28	26	17	1.97
294945--295070	29	4.4	28	85	5	135	41	16	5	36	1.72
294918--295083	29	5.6	29	82	6	120	40	18	4	35	1.72
295092--295128	19	1.9	19	88	0	56	24	27	27	21	1.99
297081--297149	35	2.0	35	97	0	129	49	8	14	27	1.73
301324--301403	3	27.0	3	89	2	126	36	0	1	62	1.03
302664--302704	22	1.9	22	85	5	57	29	2	2	65	1.18
303626--303660	18	1.9	18	94	0	61	20	11	0	68	1.20
306030--306088	21	3.0	20	82	9	68	18	11	5	64	1.44
306034--306095	20	3.1	20	82	11	74	17	12	6	62	1.50
310844--310951	54	2.0	54	90	3	173	37	14	22	25	1.93
312116--312228	45	2.5	45	82	2	118	24	23	21	30	1.99
312017--312577	121	4.7	121	87	2	783	26	20	20	32	1.97
312281--312423	76	1.9	74	82	2	178	25	19	22	32	1.97
312358--312470	45	2.5	45	82	2	118	27	18	21	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312833--312901	3	23.3	3	85	2	95	36	2	0	60	1.11
314179--314219	22	1.9	22	85	5	57	29	2	2	65	1.18
314262--314319	23	2.5	23	78	10	66	25	6	5	62	1.42
320971--321020	24	2.1	24	96	0	91	34	14	10	42	1.78
320971--321027	24	2.4	24	90	0	78	33	14	8	43	1.76
322899--322945	22	2.1	22	84	0	58	46	0	6	46	1.28
323012--323055	21	2.1	21	83	8	54	27	0	9	63	1.24
324910--324970	28	2.2	28	82	2	70	19	8	19	52	1.71
325580--325605	2	13.0	2	100	0	52	50	0	0	50	1.00
342244--342313	34	2.1	32	86	5	95	25	30	12	31	1.93
342294--342337	23	1.9	23	100	0	88	29	31	15	22	1.95
342789--342831	22	1.9	23	90	4	70	20	20	32	25	1.97
342775--342873	21	4.8	20	80	13	119	22	20	34	23	1.97
342942--343006	29	2.2	28	82	17	87	47	15	6	30	1.70
342953--343012	30	2.0	30	93	6	104	43	15	6	35	1.72
344228--344285	22	2.5	22	91	5	89	25	10	0	63	1.26
344303--344348	19	2.4	19	85	7	58	30	13	6	50	1.66
345548--345610	21	3.0	21	92	2	99	22	23	25	28	1.99
345666--345739	20	3.7	20	81	3	85	29	22	22	24	1.99
345917--345974	30	2.0	29	90	10	91	44	17	5	32	1.70
345917--345977	29	2.0	30	93	6	106	42	16	6	34	1.74
346231--346282	19	2.8	18	74	8	50	50	3	0	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348832--348870	14	3.0	14	89	10	57	43	0	7	48	1.31
355636--355684	25	2.0	25	88	4	73	34	20	2	42	1.64
357401--357474	32	2.3	32	83	0	94	29	25	25	18	1.98
358179--358224	24	1.9	24	90	0	74	36	23	23	15	1.93
358331--358364	16	2.2	16	89	5	52	44	11	0	44	1.40
359872--359902	16	2.0	16	93	6	55	51	9	6	32	1.60
362993--363029	19	1.9	19	89	10	58	32	29	13	24	1.93
363103--363156	21	2.6	21	76	2	56	42	16	16	24	1.88
363299--363340	22	1.9	22	95	0	75	26	42	11	19	1.85
363730--363841	20	5.7	20	79	2	109	15	17	22	44	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16