genome.fa.s8194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008194.1 Hibiscus syriacus cultivar Beakdansim tig00110813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2426039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3780--3878	21	4.8	21	73	14	62	26	16	32	25	1.96
3758--3850	41	2.2	42	81	9	118	22	16	35	25	1.94
4019--4060	4	10.5	4	84	0	57	69	2	2	26	1.13
4170--4228	21	2.8	21	97	0	109	37	28	13	20	1.91
4174--4314	63	2.2	62	77	5	149	34	30	13	21	1.92
4255--4352	21	4.7	21	70	7	74	31	36	13	18	1.89
4255--4352	42	2.3	44	76	13	107	31	36	13	18	1.89
5822--5880	20	3.0	20	94	0	100	50	20	13	15	1.77
6271--6328	22	2.6	22	86	0	89	18	18	43	18	1.89
6430--6467	20	2.0	20	84	5	51	44	13	15	26	1.83
6514--6561	19	2.5	19	82	3	51	22	14	29	33	1.94
7849--7882	2	17.0	2	100	0	68	50	0	0	50	1.00
14593--14638	14	3.2	14	75	6	56	34	0	2	63	1.07
14585--14652	29	2.3	27	76	16	73	38	2	1	57	1.23
17385--17466	2	41.0	2	100	0	164	50	0	0	50	1.00
27155--27202	15	3.2	15	96	0	87	52	0	29	18	1.46
30502--30555	22	2.5	22	74	17	58	59	1	0	38	1.08
30545--30569	12	2.1	12	100	0	50	64	0	0	36	0.94
30630--30669	21	1.9	21	89	0	62	67	5	2	25	1.23
31914--31966	3	18.0	3	80	3	63	62	0	1	35	1.06
31914--31954	18	2.3	18	95	0	73	58	0	2	39	1.11
32350--32753	123	3.4	121	84	8	508	25	19	17	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32415--32753	112	2.9	112	86	7	430	25	19	17	37	1.93
32750--32873	45	2.8	45	96	0	221	35	18	22	23	1.96
33527--33601	22	3.4	22	85	7	98	34	14	16	34	1.89
40732--40772	15	3.0	14	86	13	59	56	12	17	14	1.68
40732--40772	7	6.0	7	86	13	59	56	12	17	14	1.68
40847--40933	43	2.0	44	86	2	122	33	24	11	31	1.91
46275--46365	46	1.9	49	82	10	118	28	18	14	38	1.90
47423--47453	11	2.8	11	100	0	62	19	12	0	67	1.22
47453--47501	3	16.7	3	82	4	64	38	2	0	59	1.09
48856--48904	2	24.5	2	95	0	89	51	0	0	48	1.00
53899--53933	14	2.4	15	90	4	54	17	25	5	51	1.67
57369--57400	15	2.1	15	94	0	55	9	25	12	53	1.68
62547--62651	46	2.3	45	74	6	113	32	11	20	36	1.88
63783--63823	20	2.0	20	90	0	64	17	21	36	24	1.94
64779--64804	12	2.2	12	100	0	52	0	38	34	26	1.57
66864--67019	31	5.0	31	94	1	260	37	23	19	19	1.95
67699--67727	2	14.5	2	100	0	58	48	0	0	51	1.00
68285--68329	21	2.1	21	87	0	63	15	24	28	31	1.96
69310--69370	20	2.9	20	80	7	59	16	27	31	24	1.96
75142--75201	23	2.6	23	100	0	120	13	25	48	13	1.78
75564--75658	21	4.5	21	90	2	138	46	20	21	12	1.83
75899--75953	6	9.2	6	84	7	76	18	12	16	52	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78258--78342	31	2.8	32	76	15	90	75	0	16	8	1.03
81074--81242	37	4.6	37	84	2	232	34	21	17	26	1.95
81087--81222	73	1.9	73	95	3	247	35	19	19	25	1.96
81083--81242	73	2.2	73	87	3	232	34	21	17	26	1.95
81617--82270	111	6.0	108	75	11	447	31	16	23	28	1.96
81619--82292	56	12.2	56	80	7	581	31	16	23	28	1.96
81894--82007	55	2.1	53	88	4	167	30	14	22	31	1.94
83988--84071	21	4.0	21	82	0	105	29	26	17	26	1.98
87314--87345	13	2.6	13	90	9	50	34	9	0	56	1.32
96383--96419	2	18.5	2	100	0	74	51	0	0	48	1.00
96629--96690	33	1.9	32	83	9	81	40	0	6	53	1.27
98326--98387	14	4.1	15	74	16	56	70	0	3	25	1.02
98332--98386	23	2.4	22	81	6	65	70	0	1	27	0.97
98395--98734	34	9.6	34	71	20	182	42	6	4	46	1.50
98442--98511	30	2.3	30	80	7	79	37	4	4	54	1.40
98473--98693	71	3.1	74	78	16	214	42	6	4	46	1.51
98579--98725	71	2.0	73	86	3	208	42	8	4	44	1.55
98473--98736	34	7.2	36	74	14	184	42	6	4	46	1.52
98517--98728	71	3.0	69	76	15	200	41	8	4	45	1.54
98579--98738	36	4.3	39	79	10	126	42	7	5	45	1.54
98807--98832	13	2.0	13	100	0	52	30	15	30	23	1.95
99328--100500	165	7.1	165	87	3	1473	24	21	25	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99319--100500	84	14.3	84	81	5	1244	24	21	25	29	1.99
99328--100500	249	4.7	247	84	4	1323	24	21	25	29	1.99
106507--106568	25	2.5	25	76	12	65	70	0	3	25	1.02
106504--106545	13	2.9	14	82	10	50	73	0	2	23	0.94
106648--106788	68	2.1	68	84	10	182	39	7	5	47	1.54
106746--106855	36	3.2	35	75	15	111	43	7	3	45	1.49
111241--111483	38	6.3	39	82	10	270	11	35	7	46	1.68
111241--111483	117	2.1	112	81	10	269	11	35	7	46	1.68
114230--114343	51	2.3	50	87	4	158	14	32	28	23	1.95
114614--114660	16	3.1	15	79	8	51	23	2	6	68	1.24
120083--120166	26	3.2	26	66	21	75	46	11	2	39	1.54
120285--120331	17	2.7	18	83	6	62	63	4	4	27	1.31
120285--120325	18	2.4	17	87	4	55	65	2	4	26	1.25
126576--126668	31	2.9	31	78	9	98	27	17	22	32	1.96
127454--127496	12	3.8	12	81	12	63	18	16	18	46	1.84
127454--127496	22	2.0	22	95	0	77	18	16	18	46	1.84
134054--134093	21	1.9	21	89	0	62	25	40	25	10	1.86
137755--137812	24	2.4	24	97	0	107	55	8	18	17	1.67
142092--142152	23	2.7	23	81	0	77	21	24	26	27	1.99
142618--142645	14	2.0	14	100	0	56	42	7	7	42	1.59
142765--142807	21	2.0	21	90	0	68	27	20	25	25	1.99
143694--143831	60	2.3	59	79	9	154	39	15	13	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
149488--149611	62	2.0	62	100	0	248	30	14	16	38	1.88
153848--153895	22	2.2	22	96	0	87	27	12	29	31	1.93
153946--154043	20	4.8	21	75	8	87	27	11	26	34	1.90
154742--154786	22	2.1	22	84	12	58	46	0	8	44	1.34
168540--168592	11	4.5	11	73	13	52	43	18	13	24	1.86
168536--168611	36	2.1	36	95	0	134	43	21	11	23	1.85
174342--174380	20	2.0	20	90	5	62	48	5	2	43	1.38
177115--177143	15	1.9	15	100	0	58	31	20	13	34	1.92
188995--189073	28	2.7	29	80	5	88	56	7	10	25	1.58
196027--196061	17	2.1	17	89	10	54	62	22	2	11	1.41
196666--196783	21	5.7	21	71	6	80	35	26	16	22	1.94
196770--196819	19	2.7	19	87	3	66	40	28	20	12	1.87
196809--197031	20	11.4	20	77	10	201	34	26	17	21	1.96
196807--197031	40	5.8	40	90	6	257	34	25	17	21	1.96
200046--200334	19	15.4	19	94	4	525	47	16	20	15	1.83
200362--200459	19	5.4	19	84	13	143	14	22	17	45	1.84
200343--200459	53	2.2	53	96	1	218	13	24	17	43	1.86
200562--200598	14	2.6	14	91	0	65	45	21	0	32	1.52
202570--202626	14	3.7	14	77	20	60	45	22	21	10	1.82
202551--202643	33	2.8	33	95	0	168	47	21	20	10	1.80
202514--202648	19	7.6	19	75	16	119	46	23	18	11	1.81
202644--202772	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
202644--202735	33	2.8	33	93	3	150	7	18	28	45	1.76
202820--203195	93	4.1	93	98	0	727	45	19	12	22	1.84
204858--204914	14	3.7	14	75	20	60	43	22	24	8	1.81
204850--204931	33	2.5	33	100	0	164	47	19	23	9	1.79
204872--204936	19	3.7	19	74	19	77	44	21	23	10	1.83
204948--205004	14	3.7	14	75	20	60	8	24	22	43	1.81
204932--205011	33	2.4	32	93	2	133	8	21	22	47	1.78
204989--205063	20	3.7	20	78	8	89	12	24	17	46	1.81
204988--205064	40	1.9	41	94	2	138	12	24	16	45	1.83
205141--205211	33	2.2	33	92	0	115	47	18	22	11	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13