genome.fa.s8194.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008194.1 Hibiscus syriacus cultivar Beakdansim tig00110813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2426039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  4  of  13  ( 1464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570618--570823	74	2.7	76	84	4	256	22	24	31	22	1.99
572815--572892	22	3.6	21	87	3	102	34	29	21	14	1.93
573404--573443	21	1.9	21	90	10	64	25	32	30	12	1.92
579426--579622	2	101.5	2	76	21	190	51	5	0	43	1.23
579412--579622	67	3.1	65	82	12	248	51	5	0	42	1.29
580317--580509	79	2.4	79	80	6	201	23	15	25	34	1.95
583322--583368	21	2.2	22	81	11	62	53	6	6	34	1.52
591268--591345	22	3.5	22	91	0	129	32	30	23	14	1.94
591852--591889	20	1.9	20	89	10	60	21	31	34	13	1.91
601993--602023	3	10.7	3	93	6	55	32	0	0	67	0.91
602212--602258	18	2.5	19	93	3	78	72	10	0	17	1.12
602953--602999	18	2.5	19	93	3	78	72	10	0	17	1.12
602069--603551	741	2.0	741	100	0	2966	40	22	17	19	1.91
605639--606133	189	2.6	188	86	2	663	34	15	18	30	1.93
606018--606118	41	2.5	42	77	6	109	33	17	19	28	1.95
615090--615130	21	2.0	21	90	0	64	39	26	34	0	1.57
615092--615137	21	2.2	21	84	0	56	39	28	32	0	1.57
615101--615149	21	2.3	22	79	10	57	40	24	34	0	1.55
615546--615698	43	3.6	43	76	8	125	39	24	13	22	1.90
617796--617828	17	1.9	17	93	0	57	24	9	39	27	1.85
618432--618497	20	3.3	20	80	0	78	16	19	16	46	1.84
621875--622428	54	10.1	54	81	7	557	30	8	19	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623734--623765	15	2.1	15	100	0	64	37	6	12	43	1.68
623790--624928	280	4.1	280	83	3	1369	35	17	18	27	1.94
624779--625048	119	2.3	119	90	1	416	37	14	20	27	1.92
625566--625600	11	3.3	11	88	8	54	45	37	0	17	1.48
625707--625760	19	2.9	18	88	5	72	72	11	0	16	1.12
626393--626422	11	2.9	10	90	9	51	70	0	20	10	1.16
627367--627409	21	2.0	21	81	0	50	30	30	25	13	1.94
627438--627482	22	2.0	22	86	4	63	31	33	26	8	1.87
629014--629059	23	2.0	23	82	0	56	17	19	26	36	1.94
633303--633426	62	1.9	64	82	9	155	66	0	8	24	1.23
634594--634643	3	16.0	3	77	22	50	64	4	0	32	1.12
634693--634729	13	2.8	13	91	0	56	40	16	5	37	1.71
634705--634962	33	7.4	35	75	14	173	42	10	3	43	1.56
647277--647371	24	4.0	24	79	2	84	20	12	16	50	1.77
650638--650678	19	2.2	19	86	4	57	60	2	4	31	1.30
650784--650812	14	2.1	14	100	0	58	79	0	6	13	0.93
651655--651814	62	2.4	66	88	7	229	43	8	2	45	1.47
651619--651798	95	1.9	99	85	4	260	42	8	2	46	1.48
651619--651863	33	7.3	33	82	8	264	40	9	3	46	1.54
651655--651863	69	3.1	67	84	9	232	41	9	3	45	1.53
651804--651896	47	2.0	47	87	4	134	36	11	6	45	1.67
651839--651875	12	3.1	12	96	0	65	32	13	8	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657821--657874	23	2.3	24	84	9	67	55	3	11	29	1.52
662543--662593	2	25.5	2	100	0	102	50	0	0	49	1.00
662591--663269	341	2.0	340	98	0	1313	31	18	17	32	1.94
665334--665399	24	2.7	23	72	13	60	40	9	19	30	1.83
665525--665550	5	5.2	5	100	0	52	0	19	57	23	1.40
665797--665880	38	2.2	38	89	4	125	13	8	36	41	1.74
671431--671876	223	2.0	223	100	0	892	36	19	16	27	1.93
673122--673154	13	2.5	13	100	0	66	39	27	9	24	1.85
679295--679373	23	3.4	23	75	0	86	29	11	16	43	1.83
682372--682537	65	2.5	66	81	8	185	27	18	22	30	1.98
683081--683110	2	15.0	2	100	0	60	50	0	0	50	1.00
688742--688783	20	2.2	19	86	4	57	14	2	28	54	1.52
691539--691589	23	2.3	22	79	3	57	41	3	0	54	1.19
693374--693421	25	2.0	25	87	4	71	33	2	12	52	1.51
693557--693641	29	3.1	29	69	20	76	50	9	7	32	1.62
693569--693641	24	2.8	24	79	10	65	50	9	6	32	1.61
711351--711525	83	2.1	83	87	5	246	25	18	22	33	1.96
711560--711825	36	7.7	36	75	11	243	39	13	19	26	1.90
712388--712460	32	2.3	32	83	4	85	36	19	12	31	1.88
712844--712884	20	2.0	20	100	0	82	21	4	29	43	1.73
713559--713620	28	2.2	28	85	2	79	3	8	4	83	0.88
713575--713604	12	2.5	12	94	0	51	0	10	6	83	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
713575--713620	14	3.3	14	85	11	67	0	10	4	84	0.75
716574--716605	3	10.7	3	93	0	55	65	3	0	31	1.08
716669--716693	8	3.1	8	100	0	50	40	0	12	48	1.40
716780--716818	18	2.1	19	85	4	53	79	2	0	17	0.84
719474--719592	46	2.6	45	75	7	107	20	21	26	31	1.98
720244--720286	9	4.7	9	77	5	50	27	0	4	67	1.10
720362--720433	15	4.8	15	84	0	90	41	4	5	48	1.45
727313--727714	198	2.0	203	95	4	726	37	8	10	43	1.70
733325--733469	70	2.1	72	93	6	255	26	17	20	35	1.95
734263--734292	14	2.1	14	93	0	51	23	30	30	16	1.96
736244--736273	13	2.3	13	100	0	60	30	13	26	30	1.94
736991--737034	21	2.1	21	91	0	70	31	0	11	56	1.35
737025--737066	22	1.9	22	85	9	59	35	0	2	61	1.09
737009--737071	29	2.3	27	86	8	83	34	0	4	60	1.18
737540--737600	17	3.4	17	72	16	59	42	0	11	45	1.40
738164--738242	29	2.7	29	98	0	149	17	37	24	20	1.93
738400--738480	11	7.1	11	76	13	83	20	22	18	38	1.94
738397--738485	23	3.9	23	93	0	151	19	23	17	39	1.92
738863--738927	27	2.3	29	76	10	73	35	1	15	47	1.55
738964--739053	27	3.3	27	66	19	69	45	0	8	45	1.34
739325--739401	22	3.3	22	73	16	75	45	0	11	42	1.40
739300--739372	29	2.5	30	79	14	75	47	1	8	42	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
739860--739959	27	3.6	27	67	15	67	44	9	1	46	1.42
739898--740182	49	5.9	49	93	1	486	45	12	0	42	1.42
740295--740418	62	2.0	62	98	0	239	27	12	20	39	1.88
743309--743371	28	2.2	30	94	5	112	57	12	0	30	1.36
743313--743378	28	2.4	28	87	10	107	56	12	0	31	1.36
743348--743396	21	2.3	21	85	3	71	53	16	0	30	1.43
743872--743945	37	2.0	37	91	0	121	24	37	20	17	1.93
746878--747230	45	7.8	45	90	0	474	41	9	18	30	1.83
752325--752357	15	2.3	15	90	10	52	21	3	3	72	1.11
759729--759767	3	12.3	3	94	5	60	35	0	0	64	0.94
765238--765363	43	3.0	42	94	3	216	30	33	17	19	1.95
767466--767507	6	6.8	6	86	5	57	45	0	4	50	1.23
767466--767507	19	2.3	19	87	4	59	45	0	4	50	1.23
780744--780808	29	2.2	30	84	10	82	58	0	1	40	1.07
781182--781221	17	2.3	18	83	16	57	60	0	0	40	0.97
784153--784177	2	12.5	2	100	0	50	52	0	0	48	1.00
784191--784234	16	2.8	16	86	3	54	68	2	2	27	1.14
784218--784269	27	1.9	27	84	7	70	63	3	3	28	1.30
785748--785805	3	19.7	3	82	3	73	72	0	0	27	0.85
785953--786047	45	2.1	45	90	0	145	31	18	22	27	1.97
786055--786168	45	2.5	45	86	2	156	30	19	22	27	1.98
785953--786284	121	2.7	121	92	0	556	31	18	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786055--786598	166	3.3	165	90	1	820	32	18	21	27	1.97
786186--786334	45	3.3	45	85	3	194	32	17	20	28	1.96
786223--786455	121	1.9	119	86	3	324	32	19	21	26	1.97
786342--786500	45	3.5	45	87	1	210	31	19	22	26	1.98
787255--787312	22	2.6	22	94	0	98	36	12	17	34	1.87
787635--787775	54	2.6	54	79	2	140	24	21	14	38	1.92
788651--788819	75	2.3	74	82	8	191	31	24	12	31	1.92
790258--790328	35	2.0	36	97	2	135	16	32	30	19	1.95
791003--791029	12	2.2	12	100	0	54	33	0	25	40	1.56
791191--791272	39	2.1	38	86	2	110	25	19	29	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13