genome.fa.s8194.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008194.1 Hibiscus syriacus cultivar Beakdansim tig00110813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2426039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2376418--2376732	44	7.3	43	67	7	156	29	21	20	27	1.98
2376341--2376845	129	3.8	131	88	4	692	29	20	20	28	1.98
2377970--2378015	22	2.1	21	84	11	58	21	8	10	58	1.58
2389529--2389574	18	2.6	17	80	10	56	67	2	0	30	1.03
2389535--2389581	23	2.0	23	84	8	60	65	2	0	31	1.04
2392619--2392668	24	2.1	23	81	7	55	38	0	8	54	1.30
2392848--2392895	24	2.0	24	95	0	87	56	4	4	35	1.38
2394446--2394531	36	2.4	36	88	0	109	59	5	8	26	1.49
2394465--2394536	36	2.0	36	100	0	144	52	8	8	30	1.61
2395438--2395483	23	2.0	24	82	4	58	21	6	26	45	1.76
2396642--2397133	246	2.0	246	99	0	966	35	6	9	47	1.64
2397667--2397755	31	2.8	31	91	1	142	26	7	26	38	1.84
2405761--2405789	14	2.0	15	93	6	51	48	6	3	41	1.47
2407838--2407880	21	2.0	21	90	0	68	41	0	4	53	1.21
2408178--2408235	26	2.1	30	87	12	88	46	10	6	36	1.65
2409005--2409071	2	33.5	2	100	0	134	49	0	0	50	1.00
2411413--2411453	17	2.4	17	95	0	73	36	14	36	12	1.84
2418640--2418689	23	2.2	23	92	0	82	38	10	22	30	1.86
2418603--2418765	87	1.9	87	93	0	281	42	12	13	30	1.82
2419148--2419824	181	3.7	182	90	2	1024	27	15	13	44	1.83
2423443--2423964	198	2.7	197	90	3	792	28	15	15	40	1.88
2424202--2424248	24	2.0	24	86	0	67	48	17	2	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2425478--2425521	3	14.7	3	80	0	52	25	31	4	38	1.76
2425478--2425521	12	3.7	12	90	0	61	25	31	4	38	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!