genome.fa.s8194.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008194.1 Hibiscus syriacus cultivar Beakdansim tig00110813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2426039

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205592--205745	20	7.7	20	81	7	168	18	18	26	37	1.93
205591--205745	40	3.8	40	82	4	186	18	18	26	37	1.93
205738--205788	21	2.4	21	80	0	57	25	15	21	37	1.93
206056--206099	15	2.8	16	89	6	72	34	18	13	34	1.90
210174--210215	23	1.9	23	85	9	61	9	21	0	69	1.17
213171--213240	29	2.3	30	87	4	97	40	8	4	47	1.54
213405--213516	55	2.0	55	84	0	143	46	16	8	28	1.76
214368--214419	24	2.2	23	82	3	59	50	19	9	21	1.76
214380--214435	23	2.4	23	78	3	58	48	17	14	19	1.81
215563--215610	19	2.5	20	80	12	57	31	0	6	62	1.20
221034--221067	15	2.3	15	89	0	50	26	14	0	58	1.36
223535--223592	26	2.3	26	87	3	82	18	24	22	34	1.96
226756--226793	17	2.3	16	86	13	51	42	10	10	36	1.74
227418--227585	77	2.2	77	98	0	327	29	21	17	32	1.96
229167--229202	17	2.1	17	94	0	63	13	25	44	16	1.85
236480--236520	19	2.2	19	86	8	57	29	29	26	14	1.95
236480--236520	10	4.3	9	82	11	55	29	29	26	14	1.95
238378--238419	18	2.3	18	91	0	66	47	14	2	35	1.57
238387--238428	10	4.7	9	83	16	52	47	7	0	45	1.30
238387--238428	18	2.3	18	95	0	75	47	7	0	45	1.30
240353--240446	30	3.1	30	78	3	107	39	6	22	31	1.79
240786--240815	15	2.0	15	93	0	51	50	3	20	26	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241110--241263	32	4.9	31	80	8	127	29	18	19	31	1.96
241185--241266	31	2.6	32	80	3	105	26	18	23	31	1.97
241225--241289	30	2.1	31	82	2	78	20	20	26	33	1.96
241949--241974	2	13.0	2	100	0	52	50	0	0	50	1.00
244526--244619	30	3.1	30	76	3	98	40	6	21	31	1.78
245306--245429	32	3.9	32	69	18	89	33	19	16	31	1.94
246324--246368	14	3.4	14	81	12	58	22	15	22	40	1.91
249148--249177	15	2.0	15	93	0	51	50	3	20	26	1.64
249477--249581	32	3.3	32	86	4	133	29	18	19	33	1.95
250933--250989	24	2.4	24	93	0	105	38	0	24	36	1.56
251183--251256	18	3.9	18	77	10	76	21	20	31	27	1.98
251183--251259	39	2.0	39	92	0	127	23	19	29	27	1.98
256413--256448	12	3.0	12	95	0	63	36	8	33	22	1.84
256678--256735	25	2.3	23	81	18	64	37	12	10	39	1.77
263761--263819	25	2.3	24	81	16	66	37	11	10	40	1.76
264014--264063	21	2.4	21	79	0	55	22	12	22	44	1.85
264140--264224	23	3.7	23	73	14	84	18	24	27	29	1.98
274941--274979	13	3.1	13	85	14	55	17	2	0	79	0.84
278058--278105	15	3.2	15	81	0	60	12	18	58	10	1.62
279135--279206	3	23.7	3	86	8	101	62	0	1	36	1.04
287717--287798	38	2.1	38	80	10	87	28	15	17	39	1.90
292515--292565	21	2.4	21	100	0	102	23	15	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
298401--298514	44	2.7	44	84	4	144	34	17	16	31	1.93
298679--298786	42	2.5	44	82	12	129	35	30	12	21	1.91
298593--298792	43	4.7	42	73	11	149	33	25	16	25	1.95
299336--299407	32	2.2	32	85	4	92	41	5	5	47	1.50
309420--309495	6	12.7	6	95	0	125	46	0	3	50	1.20
309420--309495	10	7.6	10	95	0	125	46	0	3	50	1.20
309420--309495	4	19.0	4	94	0	125	46	0	3	50	1.20
314901--315016	42	2.8	42	95	0	205	17	20	15	46	1.84
315230--315304	17	4.5	17	69	15	57	52	1	1	45	1.17
315198--315384	31	6.7	29	71	21	91	45	1	1	51	1.15
315196--315297	31	3.3	31	80	15	97	50	0	0	49	1.07
315296--315340	24	2.0	21	83	12	54	37	0	2	60	1.09
315551--315617	20	3.3	20	95	0	125	34	14	10	40	1.81
315602--315674	15	4.9	15	93	0	110	31	19	6	42	1.77
318130--318184	18	3.1	18	76	10	58	47	5	14	32	1.67
318879--318935	24	2.4	24	93	0	96	24	21	10	43	1.83
319830--319886	29	2.0	29	92	0	96	28	3	21	47	1.67
319836--319894	29	2.0	29	90	0	91	25	6	22	45	1.76
320088--320137	25	2.0	24	84	3	64	24	12	10	54	1.67
322827--322937	52	2.1	52	100	0	222	37	5	9	47	1.58
323565--323596	16	2.0	16	100	0	64	37	6	6	50	1.53
323959--323985	12	2.2	12	100	0	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323964--323997	17	1.9	18	88	5	52	26	0	2	70	1.01
323987--324094	12	8.8	12	71	18	89	45	0	0	53	1.06
323981--324115	63	2.2	60	90	7	218	43	0	2	54	1.12
324126--324177	20	2.8	20	77	8	56	32	0	0	67	0.91
324634--324693	31	1.9	31	96	0	111	43	8	6	41	1.61
326481--326522	21	2.0	20	86	4	57	40	7	14	38	1.73
331079--331114	19	2.0	18	89	10	56	55	13	13	16	1.69
331273--331373	30	3.4	30	77	14	95	57	9	12	19	1.63
332817--332872	3	19.0	3	85	3	78	67	1	1	28	1.10
332828--332883	26	2.2	26	93	0	94	66	5	3	25	1.29
333299--333379	28	2.9	28	85	10	112	46	14	13	24	1.81
333299--333394	28	3.3	28	81	15	99	45	13	14	26	1.82
333396--333578	66	2.8	63	73	8	161	39	15	19	26	1.91
333934--333994	31	1.9	31	84	15	81	40	11	14	32	1.82
333859--334051	97	2.0	95	79	9	203	39	11	18	29	1.87
334051--334180	68	1.9	68	89	6	201	41	11	13	33	1.80
334148--334218	30	2.4	30	90	2	108	43	14	8	33	1.75
334198--334300	52	2.0	53	94	1	181	36	16	13	33	1.88
334311--334415	29	3.7	29	91	2	160	44	15	7	32	1.74
334297--334422	29	4.4	29	87	3	157	46	14	8	30	1.74
334661--334764	36	3.0	36	81	4	124	35	11	20	32	1.88
334662--334780	36	3.4	36	79	6	111	36	12	21	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334732--334964	105	2.2	100	83	8	272	37	12	19	30	1.89
335418--336697	4	322.0	4	98	1	2504	25	0	25	49	1.50
337838--337878	11	3.6	11	87	6	55	4	14	9	70	1.30
337849--337883	12	2.8	12	86	4	52	5	11	11	71	1.30
337878--337920	15	2.9	15	78	0	50	0	18	9	72	1.11
338489--338529	20	2.0	20	90	0	64	36	9	21	31	1.86
341897--341997	30	3.4	30	77	14	95	57	9	12	19	1.63
343442--343497	3	19.0	3	85	3	78	67	1	1	28	1.10
343453--343514	26	2.4	26	89	2	99	67	4	3	24	1.25
348836--348865	15	2.1	14	93	6	51	40	6	10	43	1.64
350968--351023	24	2.3	24	84	6	69	8	16	28	46	1.77
350978--351033	14	4.3	14	82	17	84	7	14	26	51	1.67
350979--351036	24	2.4	24	97	0	107	8	12	25	53	1.66
351846--351894	11	4.4	11	82	14	64	28	24	22	24	1.99
351851--351919	23	2.9	24	89	2	95	26	24	23	26	2.00
352120--352186	16	4.3	16	79	3	66	10	10	19	59	1.58
352249--352279	16	1.9	16	100	0	62	6	12	22	58	1.58
352570--352918	174	2.0	175	97	2	659	33	11	7	47	1.68
363645--363701	21	2.6	21	80	5	69	68	5	0	26	1.11
364086--364140	29	2.0	27	86	13	76	47	14	1	36	1.55
364555--364693	71	2.0	71	91	0	224	47	6	5	41	1.51
366114--366149	16	2.3	16	90	4	56	61	2	5	30	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367610--367664	13	3.9	15	82	15	57	67	3	5	23	1.28
368982--369031	3	16.7	3	79	8	57	60	4	2	34	1.27
368982--369039	12	4.5	13	75	12	50	60	3	1	34	1.24
388419--388476	28	2.1	27	87	9	82	37	3	6	51	1.46
388876--388925	3	16.7	3	95	0	82	62	4	0	34	1.14
389248--389340	35	2.7	35	83	3	116	45	25	0	29	1.54
389509--389803	153	2.0	148	88	6	441	35	6	9	48	1.61
390566--390650	35	2.4	35	88	3	118	31	0	23	44	1.54
391415--391467	22	2.3	22	81	12	63	30	1	0	67	1.01
392369--392412	20	2.2	20	88	8	63	29	4	0	65	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13