genome.fa.s8211.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008211.1 Hibiscus syriacus cultivar Beakdansim tig00110833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2208279

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225194--225231	20	1.9	20	94	0	67	26	28	21	23	1.99
225215--225282	18	3.8	18	68	16	52	29	26	14	29	1.95
233518--233555	20	1.9	20	94	0	67	26	28	21	23	1.99
233560--233716	64	2.5	63	84	7	201	29	21	16	31	1.95
233560--233735	64	2.7	62	77	14	171	28	22	17	31	1.96
236968--237039	36	2.0	36	94	2	128	38	15	8	37	1.77
243038--243068	16	1.9	16	93	0	53	32	3	0	64	1.09
243828--243906	25	3.0	26	74	10	88	68	1	0	30	0.98
243836--243883	16	2.8	18	81	12	66	64	2	0	33	1.05
243863--243903	20	2.0	21	86	13	59	68	2	0	29	1.03
245084--245130	14	3.2	14	77	16	51	74	2	0	23	0.93
245064--245130	30	2.3	30	84	2	82	70	2	0	26	1.02
245076--245117	22	1.9	22	100	0	84	71	4	0	23	1.05
245539--245580	2	21.5	2	90	4	68	50	0	0	50	1.00
251540--251596	17	3.4	17	84	13	66	73	0	7	19	1.05
253951--253995	21	2.1	21	87	0	63	31	28	24	15	1.96
254581--254615	18	1.9	18	88	11	54	54	5	17	22	1.64
254672--254715	22	2.0	22	86	4	63	45	0	22	31	1.53
255501--255804	149	2.0	149	99	0	599	27	17	20	35	1.95
255783--255827	23	2.0	23	86	0	63	20	24	28	26	1.99
256919--256956	7	5.6	7	84	3	51	89	0	0	10	0.49
256919--256956	14	2.7	14	91	0	58	89	0	0	10	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256919--256956	18	2.2	17	90	4	58	89	0	0	10	0.49
256952--257049	34	2.8	33	81	7	106	48	7	1	42	1.37
257065--257151	24	3.6	26	73	16	96	48	3	0	48	1.18
257105--257140	2	18.5	2	94	5	65	47	0	0	52	1.00
257126--257209	34	2.4	34	88	7	116	47	5	0	46	1.27
257039--257212	83	2.1	83	82	13	216	47	4	0	47	1.27
256970--257257	157	1.9	152	83	11	379	45	6	1	45	1.38
256970--257299	157	2.1	159	81	13	373	46	6	1	46	1.37
263113--263282	37	4.7	36	82	10	195	45	2	5	46	1.40
263119--263282	74	2.2	74	84	4	224	46	2	5	45	1.39
263343--263389	17	2.6	19	77	16	55	38	0	0	61	0.96
263835--263868	18	2.0	17	88	11	52	58	29	8	2	1.43
270579--270647	23	3.0	23	89	0	102	26	26	27	20	1.99
270655--270875	103	2.1	103	90	1	345	35	23	13	27	1.92
272464--272495	14	2.3	14	94	0	55	12	18	12	56	1.67
272465--272519	24	2.3	24	84	6	67	14	12	14	58	1.64
279242--279395	74	2.1	75	98	1	301	29	11	11	47	1.74
281208--281240	14	2.3	15	89	5	50	57	0	6	36	1.23
281426--281463	20	1.9	20	94	0	67	47	10	21	21	1.80
281426--281469	20	2.3	19	88	7	63	47	9	22	20	1.78
296278--296352	32	2.3	32	84	4	98	40	14	17	28	1.89
296306--296396	32	2.8	32	81	6	96	34	15	21	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296635--296677	21	2.0	21	86	0	59	32	25	9	32	1.88
296973--297011	21	1.9	20	84	5	51	10	30	10	48	1.70
299396--299452	30	1.9	30	88	0	87	56	5	12	26	1.57
301821--301884	21	2.8	24	72	20	64	59	0	0	40	0.97
301843--301932	11	8.5	11	67	21	50	51	1	2	45	1.21
301914--301965	27	1.9	27	84	7	70	53	0	0	46	1.00
302179--302212	2	17.0	2	100	0	68	50	0	0	50	1.00
302671--302696	12	2.2	12	100	0	52	50	19	23	7	1.73
303932--303987	23	2.4	23	82	14	71	41	3	0	55	1.17
304086--304184	23	4.5	22	75	20	98	53	2	1	43	1.19
304129--304168	19	2.0	21	90	9	66	55	0	2	42	1.13
304156--304231	21	3.7	20	76	20	59	53	1	0	44	1.08
304165--304241	20	3.7	21	74	20	65	53	1	0	45	1.08
304920--304968	21	2.3	21	89	0	71	44	16	4	34	1.66
306913--307593	157	4.4	154	81	8	764	29	16	4	49	1.66
306969--307557	304	2.0	300	87	4	846	27	15	4	51	1.64
309547--309595	23	2.1	23	84	0	62	28	16	12	42	1.84
315452--315553	49	2.1	50	90	1	161	48	1	12	37	1.53
323123--323154	16	2.0	16	100	0	64	25	12	12	50	1.75
327294--327349	29	2.0	27	86	13	78	48	7	0	44	1.30
337127--337162	15	2.3	16	90	4	56	77	0	0	22	0.76
337580--337635	21	2.7	21	77	0	58	35	17	12	33	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337612--337677	22	3.0	22	77	4	62	36	10	13	39	1.80
337612--337677	21	3.1	21	77	14	55	36	10	13	39	1.80
339822--339846	13	1.9	13	100	0	50	32	28	16	24	1.96
340580--340634	21	2.6	21	85	8	67	34	12	12	40	1.82
345441--345495	22	2.5	22	82	8	67	18	23	25	32	1.97
345441--345487	22	2.1	23	88	4	69	19	21	25	34	1.96
345696--345828	68	2.0	65	92	7	225	33	7	18	39	1.79
359535--359568	11	3.0	11	91	4	50	55	0	0	44	0.99
359506--359568	24	2.6	26	72	23	66	53	1	1	42	1.19
359608--359656	19	2.7	18	90	9	82	73	4	4	18	1.15
360420--360456	18	2.1	18	94	0	65	0	16	8	75	1.02
360421--360489	18	3.7	18	73	19	61	1	18	7	72	1.15
360930--361012	3	27.7	3	85	9	116	62	0	1	36	1.03
361326--361869	113	4.9	113	94	3	903	29	20	12	36	1.90
362597--363013	167	2.5	167	92	3	716	36	22	13	27	1.92
362597--363013	83	5.0	84	92	2	707	36	22	13	27	1.92
364140--364191	1	52.0	1	76	0	50	7	3	0	88	0.62
364140--364192	10	5.0	10	82	13	70	9	3	0	86	0.68
364128--364181	23	2.3	23	87	9	74	5	11	0	83	0.80
364150--364189	18	2.2	18	90	0	62	7	5	0	87	0.66
375501--375535	12	2.8	13	87	12	56	57	0	0	42	0.99
375575--375623	19	2.7	18	90	9	82	73	4	4	18	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375820--375878	29	2.0	30	83	9	77	57	3	8	30	1.45
376151--376180	13	2.3	13	94	0	51	10	60	30	0	1.30
376431--376501	19	3.7	18	77	17	63	1	15	8	74	1.12
376426--376484	24	2.4	25	83	13	79	3	11	10	74	1.18
376433--376484	21	2.3	22	87	12	70	1	13	7	76	1.07
376433--376501	20	3.5	19	76	5	68	1	15	7	75	1.09
376954--377021	3	22.7	3	93	0	118	63	1	1	33	1.13
380842--380901	3	20.0	3	100	0	120	0	33	0	66	0.92
383005--383047	22	1.9	22	85	4	59	41	2	13	41	1.57
383111--383141	14	2.2	14	94	0	53	54	19	12	12	1.70
383398--383456	3	19.7	3	100	0	118	33	0	0	66	0.92
383472--383518	20	2.3	20	75	17	53	57	4	6	31	1.43
384569--384603	17	2.1	17	94	0	61	34	20	11	34	1.88
386362--386402	6	6.8	6	97	0	73	0	46	0	53	1.00
394473--394519	22	2.1	22	88	4	67	31	31	27	8	1.87
396070--396134	23	2.8	23	78	0	76	24	27	21	26	1.99
402307--402345	19	2.0	21	90	10	64	41	0	25	33	1.56
406083--406132	24	2.1	24	96	0	91	28	8	26	38	1.84
411601--411628	12	2.3	12	100	0	56	50	0	0	50	1.00
411675--411814	54	2.5	56	75	19	150	41	5	5	47	1.49
411766--411842	10	7.8	10	68	18	54	44	2	2	50	1.29
414080--414139	20	3.0	20	78	4	59	31	20	11	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416263--416300	2	19.5	2	94	5	69	50	0	0	50	1.00
425387--425432	2	23.0	2	100	0	92	50	0	0	50	1.00
429529--429569	3	14.0	3	80	14	50	36	0	0	63	0.95
431653--431704	20	2.6	21	76	11	56	26	7	0	65	1.20
436386--436425	19	2.2	18	86	4	53	80	0	20	0	0.72
437854--438170	157	2.0	158	99	0	627	32	16	21	29	1.95
438816--439122	84	3.7	83	92	4	501	28	13	21	37	1.90
441670--441723	22	2.5	22	87	3	83	35	12	14	37	1.85
442116--442771	109	6.0	111	84	9	803	38	14	18	29	1.90
442119--442746	112	5.7	110	85	7	732	38	14	18	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10