Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008211.1 Hibiscus syriacus cultivar Beakdansim tig00110833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2208279

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1099 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2166581--2166611
2
15.5
2
100
0
62
48
0
0
51
1.00
2174351--2174376
3
8.7
3
100
0
52
30
0
0
69
0.89
2178106--2178443
168
2.0
168
92
0
559
30
22
14
32
1.94
2178949--2178995
21
2.2
21
100
0
94
23
19
14
42
1.88
2183608--2183654
21
2.2
21
100
0
94
23
19
14
42
1.88
2191339--2191373
16
2.1
17
94
5
63
42
25
0
31
1.55
2196046--2196088
21
2.0
21
81
0
50
30
30
25
13
1.94
2196068--2196217
67
2.3
67
89
3
223
29
28
26
16
1.96
2196181--2196218
20
1.9
20
88
0
58
23
34
31
10
1.89
2196520--2196590
29
2.4
30
88
6
110
40
9
12
36
1.77
2196613--2196671
30
2.0
30
93
0
100
38
5
23
32
1.77
2196760--2197062
149
2.0
149
98
0
579
27
17
18
36
1.93
2197042--2197086
23
2.0
23
86
0
63
20
24
28
26
1.99
2203581--2203651
29
2.4
30
88
6
110
40
9
12
36
1.77
2203674--2203729
29
2.0
28
92
3
94
39
5
25
30
1.78
2203817--2204114
145
2.0
148
94
3
532
28
17
18
36
1.93
2204095--2204137
22
1.9
23
85
4
61
20
25
27
25
1.99
2206564--2206876
7
46.4
7
93
5
452
0
25
56
17
1.41
2206907--2208279
7
197.9
7
94
5
2411
14
0
42
42
1.46

Tables:   1   2   3   4   5   6   7   8   9   10

The End!