genome.fa.s8211.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008211.1 Hibiscus syriacus cultivar Beakdansim tig00110833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2208279

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  8  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1701029--1701067	19	2.0	20	85	5	53	46	0	5	48	1.24
1701784--1701823	2	20.0	2	100	0	80	50	0	0	50	1.00
1704021--1704094	23	3.2	24	73	5	80	21	17	18	41	1.90
1704075--1704119	23	2.0	23	86	0	63	26	22	15	35	1.94
1704477--1704502	2	13.0	2	100	0	52	50	0	0	50	1.00
1706845--1706884	21	1.9	21	85	10	55	25	22	25	27	2.00
1707089--1707151	33	1.9	33	90	3	101	12	6	42	38	1.68
1718609--1718675	27	2.5	27	95	0	116	37	19	17	25	1.94
1722391--1722635	77	3.2	79	77	8	261	35	26	13	24	1.92
1722391--1722674	155	1.8	154	81	5	358	36	26	14	23	1.93
1727138--1727180	18	2.4	19	76	11	54	79	0	9	11	0.95
1727527--1727627	46	2.2	46	96	0	184	33	6	13	45	1.71
1728847--1728879	17	1.9	17	88	11	50	48	24	0	27	1.51
1733414--1733473	31	2.0	31	86	3	86	30	11	8	50	1.68
1734482--1734676	105	1.9	105	83	4	259	54	14	12	18	1.71
1734637--1734698	23	2.7	23	85	7	90	56	9	14	19	1.65
1739621--1739666	3	15.3	3	83	0	56	26	0	6	67	1.15
1742389--1742446	17	3.4	17	97	0	107	15	24	43	17	1.87
1742440--1742504	19	3.4	19	78	6	69	29	29	23	18	1.98
1748999--1749056	17	3.4	17	97	0	107	15	24	43	17	1.87
1749050--1749139	19	4.7	19	86	6	119	27	30	24	17	1.97
1749052--1749139	9	9.1	10	74	12	85	28	30	22	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1749902--1749962	31	2.0	31	93	0	104	22	9	11	55	1.64
1752074--1752116	22	1.9	23	90	4	70	11	11	18	58	1.63
1754918--1754954	10	3.7	10	85	0	56	40	0	0	59	0.97
1766418--1766443	11	2.4	11	100	0	52	73	0	7	19	1.07
1766419--1766456	17	2.2	17	86	9	51	73	0	5	21	1.02
1770969--1771010	21	2.0	21	100	0	84	38	9	14	38	1.78
1782436--1782461	2	13.0	2	100	0	52	50	0	0	50	1.00
1782957--1783025	23	3.0	23	78	0	84	17	23	26	33	1.96
1789306--1789333	13	2.2	13	100	0	56	42	7	10	39	1.67
1790849--1790886	2	19.0	2	100	0	76	50	0	0	50	1.00
1795705--1795771	20	3.3	20	81	8	91	25	17	5	50	1.69
1796008--1796056	19	2.4	21	83	10	66	55	0	0	44	0.99
1797449--1797535	31	2.8	31	78	5	86	39	5	12	42	1.67
1797456--1797548	31	3.0	30	78	6	78	40	5	10	43	1.62
1801956--1802049	45	2.1	45	92	2	154	15	22	14	46	1.83
1803003--1803115	57	2.0	57	87	0	163	53	17	15	14	1.74
1803003--1803115	28	4.0	29	78	12	126	53	17	15	14	1.74
1804404--1804483	40	2.0	40	92	0	133	48	17	12	21	1.80
1809317--1809426	31	3.5	30	68	17	89	22	22	19	35	1.96
1809318--1809435	37	3.5	34	75	24	126	22	22	19	35	1.96
1809317--1809435	63	1.9	63	96	0	220	22	22	19	35	1.96
1809534--1809622	21	4.0	21	70	11	70	43	1	2	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1809524--1809621	44	2.3	43	77	17	107	46	1	2	50	1.19
1809646--1809690	23	2.0	23	82	8	56	53	2	4	40	1.33
1809996--1810444	223	2.0	223	98	0	871	35	15	18	31	1.92
1824100--1824126	2	13.5	2	100	0	54	51	0	0	48	1.00
1827590--1827626	19	1.9	19	88	0	56	24	35	29	10	1.89
1828106--1828323	103	2.1	103	96	0	400	25	12	24	37	1.91
1828340--1828425	23	3.7	23	90	0	127	19	27	26	25	1.99
1834461--1834503	21	2.0	21	81	0	50	27	30	25	16	1.97
1835051--1835268	103	2.1	103	95	0	391	25	12	24	37	1.91
1835287--1835347	23	2.7	23	82	5	79	21	26	24	27	1.99
1836311--1836404	31	3.0	31	85	0	125	21	17	22	39	1.92
1841797--1841987	96	2.0	94	95	4	348	28	17	17	36	1.93
1846823--1846855	17	2.0	17	94	5	59	78	9	6	6	1.08
1847368--1847424	18	3.2	18	65	30	50	22	33	29	14	1.93
1847369--1847454	34	2.5	35	92	1	138	20	33	26	18	1.96
1848799--1848846	19	2.5	20	82	3	62	52	6	12	29	1.63
1850399--1850440	21	2.0	21	95	0	75	23	21	28	26	1.99
1850469--1850508	20	1.9	21	85	10	55	37	37	10	15	1.80
1850723--1850792	34	2.1	32	86	5	95	32	15	28	22	1.95
1854948--1855263	103	3.1	103	96	0	578	26	13	23	36	1.92
1855287--1855347	23	2.7	23	92	0	95	19	27	26	26	1.99
1857400--1857438	18	2.2	18	95	0	69	38	0	12	48	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1884628--1884982	89	4.0	88	89	6	533	12	13	23	50	1.74
1887933--1888004	36	2.0	36	100	0	144	33	27	5	33	1.80
1896629--1896700	28	2.4	28	84	9	90	41	2	0	55	1.14
1896644--1896695	24	2.0	26	82	10	63	42	0	0	57	0.98
1897025--1897063	20	2.0	20	85	5	53	28	0	0	71	0.86
1897407--1897476	23	3.0	24	76	17	67	41	2	0	55	1.14
1897410--1897495	27	3.4	22	75	24	73	40	2	0	56	1.12
1897421--1897496	27	2.9	26	77	18	86	40	2	0	56	1.13
1898817--1898862	23	2.0	23	91	0	74	28	26	23	21	1.99
1903591--1903642	15	3.2	17	72	22	58	36	21	0	42	1.53
1905060--1905103	21	2.1	21	86	0	61	29	27	27	15	1.96
1905131--1905175	22	2.0	22	86	4	63	35	33	22	8	1.85
1905867--1905988	31	3.9	31	78	13	117	31	20	18	29	1.97
1905978--1906049	30	2.4	30	92	0	117	23	20	25	30	1.99
1908056--1908100	23	2.0	23	81	0	54	28	26	24	20	1.99
1908784--1908824	21	2.0	21	85	0	55	19	21	29	29	1.98
1915538--1915575	20	1.9	20	88	0	58	10	31	34	23	1.89
1919096--1919139	21	2.1	21	86	0	61	29	27	27	15	1.96
1919903--1920027	31	4.0	30	80	13	137	29	20	20	30	1.97
1931615--1931673	29	2.0	29	86	0	82	54	18	16	10	1.70
1939864--1939928	2	32.5	2	100	0	130	49	0	0	50	1.00
1939945--1940008	29	2.2	29	97	2	119	54	15	14	15	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940046--1940101	29	1.9	29	92	7	96	44	7	7	41	1.59
1944942--1944984	21	2.0	21	100	0	86	32	18	16	32	1.93
1946583--1946668	19	4.2	19	72	16	73	37	4	26	31	1.77
1946633--1946669	19	1.9	19	100	0	74	37	5	29	27	1.79
1946851--1946877	6	4.5	6	100	0	54	0	14	51	33	1.43
1947172--1947208	19	1.9	19	94	0	65	21	16	29	32	1.95
1949037--1949081	21	2.1	21	91	0	72	33	28	22	15	1.95
1950153--1950197	23	2.0	23	86	0	63	26	28	24	20	1.99
1950177--1950479	149	2.0	149	98	0	588	36	19	16	27	1.93
1950567--1950625	30	2.0	30	93	0	100	32	23	5	38	1.77
1950647--1950718	29	2.5	29	90	0	108	37	12	11	38	1.79
1951019--1951056	20	1.9	20	88	0	58	10	31	34	23	1.89
1951020--1951191	67	2.6	67	88	3	240	16	26	27	28	1.97
1957220--1957264	23	2.0	23	86	0	63	26	28	24	20	1.99
1957244--1957546	149	2.0	149	98	0	588	36	19	16	27	1.93
1957635--1957693	30	2.0	30	93	0	100	32	23	5	38	1.77
1957715--1957786	29	2.5	29	93	0	117	38	12	9	38	1.76
1958087--1958124	20	1.9	20	88	0	58	10	31	34	23	1.89
1958088--1958259	67	2.6	67	88	3	240	16	26	27	28	1.97
1959905--1959994	23	3.9	23	88	0	126	17	26	25	30	1.98
1960225--1960264	22	1.9	21	85	10	55	32	0	17	50	1.47
1962603--1962642	17	2.4	17	87	4	55	32	0	22	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1963783--1963827	21	2.1	21	87	0	63	31	28	24	15	1.96
1964658--1964797	31	4.5	31	92	0	235	20	20	21	37	1.94
1964658--1964813	31	5.0	31	90	1	224	20	19	22	37	1.95
1967927--1967971	21	2.1	21	87	0	63	31	28	24	15	1.96
1968809--1968948	31	4.5	31	92	0	235	20	20	21	37	1.94
1968809--1968964	31	5.0	31	90	1	224	20	19	22	37	1.95
1971588--1971655	23	3.0	23	86	0	100	17	26	26	29	1.98
1971886--1971925	22	1.9	21	85	10	55	32	0	17	50	1.47
1974018--1974091	31	2.4	31	80	8	80	28	18	21	31	1.97
1976196--1976222	13	2.1	13	100	0	54	59	0	0	40	0.98

Tables:   1   2   3   4   5   6   7   8   9   10