genome.fa.s8211.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008211.1 Hibiscus syriacus cultivar Beakdansim tig00110833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2208279

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590051--590116	28	2.4	28	85	10	98	56	10	0	33	1.34
590086--590134	21	2.3	21	85	3	71	53	16	0	30	1.43
590485--590517	16	2.1	16	100	0	66	27	24	18	30	1.98
590632--590689	25	2.3	25	79	5	64	24	43	15	17	1.87
590668--590710	20	2.4	18	82	17	54	16	55	6	20	1.64
590676--590716	20	2.0	20	100	0	82	14	60	4	19	1.51
590755--590838	29	2.9	29	98	0	159	16	30	32	20	1.95
595584--595613	11	2.6	12	94	5	53	63	0	0	36	0.95
596873--596926	21	2.6	21	82	11	74	33	16	7	42	1.76
597933--597971	2	19.5	2	100	0	78	0	48	0	51	1.00
597971--598025	2	27.5	2	100	0	110	49	0	0	50	1.00
599292--599814	259	2.0	259	100	0	1046	36	17	13	32	1.89
600215--600274	20	3.0	20	95	2	104	38	5	25	31	1.77
600426--600504	38	2.1	38	84	11	101	50	3	0	45	1.19
603546--603669	60	2.1	60	83	7	155	18	12	26	42	1.85
605700--605749	25	2.0	26	84	11	68	34	10	18	38	1.84
608370--608399	3	10.0	3	92	0	51	30	0	3	66	1.07
618843--618874	6	5.3	6	100	0	64	18	18	62	0	1.33
618888--618936	13	3.8	13	86	5	73	18	51	18	12	1.76
618888--618936	25	1.9	26	91	4	82	18	51	18	12	1.76
626565--626608	23	2.0	23	81	4	54	22	6	2	68	1.25
627108--627205	44	2.3	43	82	7	117	52	5	1	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
628256--628313	23	2.5	22	78	8	62	50	13	25	10	1.74
633766--633827	3	20.7	3	83	0	79	62	0	3	33	1.11
633768--633827	21	2.9	21	89	0	93	61	0	3	35	1.12
633773--633842	12	5.9	11	80	12	52	62	0	5	31	1.18
636985--637040	16	3.6	16	87	2	78	37	5	19	37	1.75
637599--637732	32	4.2	33	82	3	157	49	4	4	41	1.43
637606--637732	65	2.0	63	83	12	159	50	4	3	40	1.42
638056--638102	22	2.1	21	85	14	60	55	0	0	44	0.99
638039--638120	39	2.0	41	84	9	107	54	2	0	42	1.13
638086--638134	23	2.2	23	85	7	66	48	2	0	48	1.12
638098--638145	23	2.0	23	84	8	60	50	4	0	45	1.21
638624--638722	47	2.1	47	84	3	128	46	1	10	42	1.44
649077--649129	2	27.0	2	96	3	99	49	0	0	50	1.00
649532--649575	23	1.9	23	85	0	61	31	13	2	52	1.53
650063--650283	35	6.6	33	74	16	161	46	4	7	42	1.51
650063--650310	36	7.3	35	75	16	170	45	4	7	42	1.51
650062--650278	69	3.2	67	76	16	178	45	4	7	42	1.52
657741--657805	25	2.6	25	95	0	121	27	23	29	20	1.98
658336--658378	21	2.0	21	86	0	59	16	25	27	30	1.97
658835--658886	15	3.8	14	73	21	56	57	0	38	3	1.17
663955--664983	84	12.4	83	78	7	959	29	25	20	24	1.99
664047--664983	168	5.6	168	89	1	1333	29	25	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664014--664983	330	2.9	331	88	2	1403	29	25	20	24	1.99
665480--665505	13	2.0	13	100	0	52	23	30	15	30	1.95
665698--665921	35	6.6	33	74	17	156	46	4	7	41	1.51
665752--665890	37	3.8	36	73	20	128	46	4	6	42	1.49
665711--665948	70	3.4	69	73	19	199	46	4	7	41	1.52
665711--665948	36	6.8	35	72	15	147	46	4	7	41	1.52
677441--677502	24	2.6	24	84	0	70	32	25	22	19	1.97
682675--682729	23	2.4	23	81	0	65	50	16	10	21	1.75
686968--687028	23	2.7	23	81	0	77	13	6	16	63	1.48
687892--687997	45	2.4	45	84	6	135	34	19	16	28	1.94
687940--688080	64	2.2	64	83	5	169	34	20	18	26	1.96
688814--688878	31	2.1	31	85	5	87	21	20	23	35	1.96
688864--688962	30	3.3	30	91	1	146	21	21	26	31	1.98
694136--694175	18	2.2	18	90	0	62	47	0	32	20	1.50
701119--701156	20	1.9	20	88	0	58	21	26	10	42	1.85
705087--705168	31	2.6	31	92	0	137	36	20	9	32	1.86
707990--708017	2	14.0	2	100	0	56	50	0	0	50	1.00
709768--709817	2	25.0	2	100	0	100	50	0	0	50	1.00
722578--722607	5	6.0	5	100	0	60	0	0	60	40	0.97
723217--723354	60	2.3	60	82	1	150	34	13	14	37	1.86
724767--724960	97	2.0	97	100	0	388	24	12	29	32	1.92
725958--726031	35	2.1	35	100	0	148	21	17	13	47	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728165--728233	22	3.2	20	80	17	77	40	1	1	56	1.17
728156--728228	8	9.9	8	69	20	52	43	1	2	52	1.24
728309--728342	14	2.4	14	85	0	50	55	2	0	41	1.15
728432--728484	18	2.9	17	83	13	54	49	0	0	50	1.00
728553--728585	17	1.9	17	93	0	57	54	0	0	45	0.99
728721--728766	14	3.3	14	100	0	92	36	13	0	50	1.41
734563--734621	28	2.1	28	100	0	118	27	20	18	33	1.96
737804--737852	24	2.0	24	92	7	82	53	2	4	40	1.32
740932--741030	33	3.0	34	88	7	143	26	26	17	30	1.97
741863--742005	58	2.4	60	78	10	143	36	16	16	31	1.90
744946--745028	39	2.2	36	81	12	96	26	19	9	44	1.81
745699--746645	305	3.1	308	91	4	1502	17	25	16	39	1.91
746168--747136	484	2.0	485	94	3	1715	18	26	16	38	1.91
746646--748687	313	6.5	314	92	2	3243	17	26	17	39	1.91
750013--750039	2	13.5	2	100	0	54	48	0	0	51	1.00
750037--750094	4	14.5	4	100	0	116	25	0	24	50	1.50
750756--750887	65	2.0	66	98	1	257	23	13	31	31	1.93
752059--752931	439	2.0	437	88	3	1310	36	12	14	37	1.83
756671--756764	45	2.0	46	89	4	145	48	12	8	29	1.71
756784--756823	16	2.5	16	79	0	53	47	0	0	52	1.00
759193--759238	19	2.3	20	88	3	67	50	10	2	36	1.50
772619--772643	3	8.3	3	100	0	50	68	32	0	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773068--773110	14	3.2	14	84	15	56	46	0	2	51	1.13
773061--773112	23	2.3	22	81	12	61	44	0	1	53	1.11
779534--779575	16	2.6	17	81	11	52	35	0	0	64	0.94
779586--779628	18	2.5	19	82	17	58	55	0	6	37	1.27
784921--784975	21	2.6	21	88	0	65	23	16	30	29	1.96
785008--785048	20	2.0	20	90	0	64	43	4	14	36	1.67
787273--787297	2	12.5	2	100	0	50	52	0	0	48	1.00
790487--790529	20	2.2	20	100	0	86	60	6	13	18	1.55
798439--798533	33	2.9	33	84	1	111	17	17	27	36	1.93
800706--800748	18	2.4	18	80	3	52	41	6	0	51	1.29
800817--800888	11	6.9	10	75	10	56	50	0	2	47	1.15
800799--800882	30	2.7	30	85	10	116	51	0	2	46	1.14
801283--801325	21	2.0	21	86	8	61	48	2	0	48	1.14
807183--807375	94	2.0	97	95	5	349	22	16	20	39	1.92
811394--811418	12	2.1	12	100	0	50	48	8	0	44	1.32
812467--812610	51	2.8	51	88	5	211	45	15	11	27	1.81
813173--813243	35	2.0	35	100	0	142	25	22	16	35	1.95
815826--815917	21	4.4	20	78	20	75	22	19	33	23	1.97
816285--816334	21	2.4	21	86	0	64	38	28	10	24	1.87
817834--817938	20	5.6	20	80	13	123	15	12	20	52	1.74
818273--818338	24	2.8	23	80	8	80	24	16	40	18	1.90
818668--818710	2	22.0	2	95	4	79	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818914--819002	24	3.6	24	69	19	58	47	4	6	41	1.50
823001--823027	2	13.5	2	100	0	54	51	0	0	48	1.00
823650--823701	16	3.2	17	72	22	58	42	0	21	36	1.53
825863--825887	2	12.5	2	100	0	50	0	52	0	48	1.00
826487--826517	2	15.5	2	93	0	53	54	0	0	45	0.99
830067--830104	2	20.0	2	89	10	62	52	0	0	47	1.00
837342--837367	2	13.0	2	100	0	52	50	0	0	50	1.00
841458--841489	3	10.3	3	93	6	55	34	0	0	65	0.93
842537--842603	31	2.2	31	91	0	107	22	10	16	50	1.75
842548--842616	31	2.2	31	92	0	111	23	13	15	47	1.80

Tables:   1   2   3   4   5   6   7   8   9   10