genome.fa.s8211.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008211.1 Hibiscus syriacus cultivar Beakdansim tig00110833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2208279

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443168--443694	76	7.0	76	96	1	970	22	20	20	36	1.95
443172--443694	225	2.3	227	97	1	996	22	20	20	36	1.95
443633--443750	56	2.1	57	95	1	211	23	20	19	36	1.95
443690--444007	76	4.3	75	93	2	534	21	21	21	35	1.96
443687--444007	148	2.1	151	92	4	542	21	20	21	35	1.96
444314--444552	121	2.0	122	98	0	462	15	43	23	17	1.87
445723--445753	14	2.2	14	100	0	62	51	0	6	41	1.27
447544--447583	18	2.2	18	86	8	55	25	5	5	65	1.34
449642--449693	20	2.6	20	81	6	61	30	23	26	19	1.98
451529--451557	4	7.2	4	100	0	58	0	75	0	24	0.80
457904--457959	27	2.1	27	83	9	71	57	5	5	32	1.44
459490--459562	37	2.0	37	100	0	146	35	19	23	21	1.96
459579--459998	55	7.6	55	87	3	501	28	16	24	30	1.97
466534--466583	25	2.0	25	88	11	75	52	8	6	34	1.55
466567--466603	19	1.9	19	100	0	74	48	5	8	37	1.56
466536--466592	25	2.2	25	81	9	71	54	5	7	33	1.50
466700--467558	434	2.0	434	98	0	1655	47	9	15	28	1.76
471869--472009	18	8.4	17	71	17	100	46	5	2	45	1.38
471851--471935	11	7.4	11	70	19	57	51	3	0	44	1.18
471875--472029	83	1.9	83	95	0	283	45	5	3	45	1.46
471871--472152	83	3.5	82	78	10	257	47	5	3	43	1.44
472096--472234	2	70.0	2	67	19	51	47	2	6	43	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472029--472201	81	2.1	81	90	0	265	46	3	5	43	1.44
472108--472143	15	2.4	15	95	0	63	50	5	2	41	1.40
472029--472231	81	2.5	81	84	4	225	48	3	5	42	1.44
472599--472698	7	14.6	7	80	4	78	47	30	0	23	1.52
472599--472691	28	3.4	28	85	2	118	46	30	0	23	1.53
472713--472757	24	1.9	23	86	4	63	46	8	6	37	1.61
472716--472786	37	1.9	37	85	5	99	40	9	9	39	1.72
472754--472838	24	3.2	26	73	18	77	40	7	10	42	1.67
472775--472873	22	4.5	21	77	15	87	40	7	9	43	1.64
472777--472867	24	4.0	22	77	14	80	40	7	8	42	1.64
472913--472965	21	2.5	21	81	0	70	37	7	7	47	1.60
472977--473257	31	8.8	31	72	22	99	44	3	2	49	1.33
472983--473237	65	3.9	65	79	14	251	44	3	2	49	1.33
473037--473098	14	4.4	14	75	18	56	46	6	1	45	1.38
472941--473211	131	2.1	133	81	9	324	43	4	3	49	1.39
473116--473271	6	25.2	6	73	17	76	47	1	1	49	1.20
472920--473218	153	2.0	146	79	12	322	42	5	3	48	1.42
473145--473257	21	5.2	20	70	24	70	48	0	0	50	1.06
473149--473259	43	2.6	42	80	16	120	50	0	0	48	1.06
473176--473268	15	6.6	15	77	20	78	48	0	1	50	1.07
473152--473272	14	9.2	13	75	20	92	50	0	0	47	1.12
473656--473682	10	2.7	10	100	0	54	11	33	7	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473968--474050	6	14.0	6	73	16	57	42	37	2	18	1.63
473969--474131	12	13.8	12	68	15	56	44	39	1	14	1.55
474041--474125	6	14.2	6	75	4	55	45	42	1	10	1.46
474053--474125	29	2.5	31	78	14	84	45	42	1	10	1.48
474054--474127	23	3.2	24	74	12	73	43	44	1	10	1.47
474395--474630	102	2.3	102	94	0	400	21	8	19	50	1.73
477472--477504	12	2.8	12	90	9	50	39	3	0	57	1.14
477466--477504	11	3.5	11	86	6	51	41	2	2	53	1.28
477729--477770	18	2.4	18	78	21	54	40	0	0	59	0.97
477760--477806	14	3.7	14	71	26	50	51	4	0	44	1.21
477758--477807	23	2.1	24	96	3	93	48	4	0	48	1.20
477817--477885	22	3.0	23	80	16	79	40	2	1	55	1.24
478060--478098	16	2.4	16	95	0	69	38	15	28	17	1.91
478123--478198	32	2.4	32	78	8	84	15	17	27	39	1.90
487245--487303	23	2.7	22	89	5	84	16	27	32	23	1.96
496775--496809	15	2.3	15	100	0	70	31	0	14	54	1.40
503886--503915	2	15.0	2	100	0	60	50	0	0	50	1.00
507336--507384	15	3.4	15	80	8	57	0	20	2	77	0.87
507852--507930	3	26.3	3	89	5	106	60	0	0	39	0.97
508177--508232	17	3.2	17	68	26	53	17	25	8	48	1.76
508160--509168	113	9.0	113	93	1	1586	30	18	14	35	1.92
508397--508460	20	3.2	20	64	24	53	20	21	6	51	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509898--510371	83	5.7	83	95	1	779	36	22	13	28	1.91
511510--511564	5	11.2	5	76	18	53	0	16	0	83	0.64
511507--511585	11	7.1	10	77	18	68	2	13	0	83	0.75
511511--511561	4	12.8	4	80	14	52	0	15	0	84	0.63
511507--511571	22	2.9	22	82	13	80	0	16	0	83	0.66
511511--511574	17	3.9	15	86	13	83	0	15	0	84	0.63
511511--511574	31	2.0	34	90	9	107	0	15	0	84	0.63
511507--511574	19	3.6	17	81	16	73	0	16	0	83	0.64
528974--529005	15	2.1	15	94	0	55	46	6	18	28	1.73
534358--534420	3	21.0	3	93	0	108	63	0	0	36	0.95
546210--546255	18	2.6	18	96	0	83	47	4	28	19	1.68
553904--553985	39	2.1	38	84	2	101	48	17	7	26	1.73
555831--555869	20	2.0	20	89	0	60	38	30	0	30	1.58
558013--558043	3	10.3	3	100	0	62	35	0	0	64	0.94
558952--559079	60	2.1	59	82	5	150	32	14	20	32	1.93
558952--559098	60	2.5	59	75	14	140	31	14	20	33	1.93
559506--559584	36	2.2	36	93	4	133	34	16	36	12	1.87
559644--559724	13	5.9	15	67	20	52	50	0	0	49	1.00
559640--559727	38	2.4	38	86	3	126	50	0	0	50	1.00
559728--559753	12	2.2	12	100	0	52	15	53	23	7	1.67
563090--563115	12	2.2	12	100	0	52	69	0	0	30	0.89
567130--567213	17	5.0	17	83	12	102	23	33	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567162--567191	14	2.1	14	100	0	60	26	26	20	26	1.99
567244--567285	21	2.0	21	85	0	57	33	23	23	19	1.97
567568--567637	34	2.1	32	81	5	77	34	15	27	22	1.95
569654--569710	30	1.9	29	82	3	69	33	12	5	49	1.63
569683--569740	19	3.0	20	80	16	68	29	12	8	50	1.69
569852--569911	30	2.0	30	93	6	104	33	6	16	43	1.74
570049--570098	17	2.9	17	81	3	64	22	36	16	26	1.94
571044--571093	25	2.0	25	96	0	91	44	12	22	22	1.85
573297--573384	24	3.7	24	83	6	115	26	25	17	31	1.97
576621--576699	39	2.0	39	92	0	131	45	8	6	39	1.61
581971--582020	25	2.0	24	88	11	75	34	14	6	46	1.69
582239--582370	41	3.2	41	66	19	119	23	28	31	16	1.96
582325--582490	55	3.0	55	99	0	323	28	21	34	15	1.94
582435--582564	41	3.1	41	65	20	115	23	26	32	16	1.96
582578--582687	29	3.8	29	100	0	220	16	30	29	23	1.96
582703--582754	23	2.3	23	100	0	104	25	44	7	23	1.79
582876--582927	25	2.1	25	92	0	86	28	9	32	28	1.89
582989--583046	4	14.0	4	75	7	53	63	0	34	1	1.04
582988--583019	17	1.9	16	93	6	55	62	0	37	0	0.95
582989--583046	25	2.3	25	96	0	107	63	0	34	1	1.04
583251--583341	45	2.0	47	87	8	134	41	0	12	46	1.41
585706--585738	17	1.9	17	93	0	57	45	12	6	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585941--586118	11	18.3	10	72	22	68	46	14	0	39	1.48
585987--586298	26	12.7	26	74	16	220	44	11	1	41	1.51
585932--586076	72	2.0	72	100	0	290	46	13	1	38	1.52
585943--586097	16	10.2	15	67	27	55	47	14	0	37	1.50
586013--586118	46	2.3	46	96	0	194	46	14	0	39	1.44
585944--586071	19	7.1	18	68	21	72	46	14	0	37	1.51
586059--586353	98	3.0	96	88	5	319	44	10	2	43	1.50
585932--586298	124	3.0	124	88	4	559	44	11	1	41	1.52
589180--589238	26	2.3	24	78	16	64	40	3	8	47	1.51
590047--590109	28	2.2	30	91	5	103	57	11	0	31	1.34

Tables:   1   2   3   4   5   6   7   8   9   10