genome.fa.s8214.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008214.1 Hibiscus syriacus cultivar Beakdansim tig00110840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2117680

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1737508--1737537	6	5.0	6	95	0	51	50	13	16	20	1.78
1755617--1755644	2	14.0	2	100	0	56	50	0	0	50	1.00
1755936--1755987	29	1.9	25	85	14	68	38	0	1	59	1.08
1777224--1777271	16	3.1	16	84	6	62	62	6	12	18	1.50
1778151--1778189	13	2.9	13	96	3	69	82	7	10	0	0.86
1779315--1779384	24	2.9	24	91	0	113	40	15	17	27	1.90
1783421--1783508	24	3.7	24	82	0	86	43	15	13	27	1.85
1786732--1786768	16	2.3	16	90	0	56	62	5	0	32	1.18
1797420--1797474	20	2.8	20	97	0	101	21	7	20	50	1.71
1797466--1797492	12	2.2	12	100	0	54	40	14	7	37	1.74
1798032--1798087	21	2.6	22	81	18	73	35	26	17	19	1.94
1802899--1802932	16	2.1	16	89	10	52	32	2	14	50	1.58
1807771--1807825	23	2.4	23	81	0	74	18	25	25	30	1.98
1807842--1807896	24	2.2	25	90	3	85	20	23	23	32	1.98
1808751--1808806	19	3.0	20	84	10	73	44	10	16	28	1.80
1808858--1808892	12	2.9	12	82	0	52	51	0	20	28	1.47
1820468--1820518	15	3.4	15	86	0	75	15	15	33	35	1.90
1828748--1828862	21	5.6	21	70	4	108	20	17	25	36	1.94
1828769--1828882	20	5.6	20	70	4	93	17	19	23	39	1.92
1828747--1828885	41	3.4	41	93	0	251	19	17	24	38	1.93
1828745--1828922	82	2.2	81	86	6	243	20	18	23	37	1.94
1829013--1829049	6	6.2	6	93	0	65	35	29	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1829542--1829576	6	6.0	6	90	6	54	0	20	45	34	1.51
1833360--1833431	22	3.2	22	92	3	126	41	15	11	31	1.82
1840853--1840892	21	1.9	21	94	0	71	10	25	30	35	1.88
1843148--1843205	29	2.0	29	93	0	98	25	17	17	39	1.91
1843235--1843678	123	3.6	124	83	3	475	28	20	17	32	1.96
1843328--1843678	124	2.8	123	85	2	454	29	21	17	31	1.96
1843696--1843725	15	2.0	15	100	0	60	20	40	0	40	1.52
1844600--1844667	25	2.7	25	88	4	102	47	0	14	38	1.45
1846236--1846318	33	2.6	32	82	1	85	30	12	32	25	1.92
1849112--1849282	86	2.0	86	94	2	301	45	14	19	21	1.85
1850148--1850184	17	2.2	17	95	0	65	2	5	18	72	1.15
1868236--1868419	41	4.5	42	80	4	171	32	16	13	37	1.87
1868425--1868539	42	2.8	41	74	17	112	26	17	20	35	1.94
1868433--1868582	79	1.9	83	84	8	211	25	19	18	37	1.94
1869184--1869263	36	2.2	37	84	2	99	28	11	11	48	1.73
1872503--1872632	55	2.4	55	87	3	176	53	12	10	24	1.69
1879761--1879842	23	3.8	22	84	6	96	18	25	32	23	1.97
1881098--1881156	23	2.6	23	88	0	91	27	27	27	18	1.98
1891192--1891247	2	28.0	2	100	0	112	50	0	0	50	1.00
1893816--1894146	35	9.3	35	87	2	430	36	21	19	22	1.95
1893816--1894146	106	3.1	105	85	5	445	36	21	19	22	1.95
1893816--1894148	141	2.4	140	94	1	567	36	21	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1894133--1895419	216	6.0	216	90	1	1973	34	15	18	32	1.92
1894133--1895419	430	3.0	428	91	2	2037	34	15	18	32	1.92
1896000--1896036	2	18.5	2	100	0	74	48	0	0	51	1.00
1899673--1899703	16	1.9	16	93	0	53	74	0	0	25	0.82
1899674--1899714	20	2.0	22	85	9	59	75	0	0	24	0.80
1900963--1900996	15	2.3	15	94	0	59	35	29	17	17	1.93
1901108--1901185	24	3.2	26	80	12	85	32	24	5	38	1.77
1901141--1901180	12	3.3	12	96	0	71	37	25	2	35	1.69
1905936--1905966	16	1.9	16	93	0	53	74	0	0	25	0.82
1905937--1905977	20	2.0	22	85	9	59	75	0	0	24	0.80
1907228--1907261	15	2.3	15	94	0	59	35	29	17	17	1.93
1907373--1907450	24	3.2	26	80	12	85	32	24	5	38	1.77
1907406--1907445	12	3.3	12	96	0	71	37	25	2	35	1.69
1912692--1912773	36	2.3	36	78	14	96	47	13	10	28	1.76
1917605--1917714	50	2.2	51	83	3	143	23	29	31	15	1.95
1918591--1918630	2	20.0	2	100	0	80	50	0	0	50	1.00
1921281--1921310	13	2.4	13	94	5	53	60	0	0	40	0.97
1926516--1926613	51	1.9	51	85	0	133	16	31	31	20	1.95
1926791--1926872	41	2.0	41	100	0	164	34	31	0	34	1.58
1926893--1926954	23	2.6	23	75	14	63	30	0	3	66	1.08
1926921--1926954	18	1.9	17	88	5	50	32	0	5	61	1.20
1927692--1927766	30	2.5	30	89	4	107	32	37	0	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1928390--1928429	16	2.5	16	100	0	80	12	22	10	55	1.67
1932708--1932782	15	4.6	16	79	18	59	78	0	21	0	0.75
1932724--1932782	5	11.6	5	83	16	77	79	0	20	0	0.73
1934792--1935076	90	3.2	90	94	1	484	26	18	21	32	1.97
1935134--1935376	102	2.4	102	80	4	255	29	19	13	38	1.89
1935287--1935377	37	2.5	36	84	7	121	27	24	13	35	1.92
1935943--1936720	44	17.6	45	68	7	270	29	20	20	29	1.98
1935707--1937026	134	10.0	134	86	3	1630	30	19	19	29	1.97
1935707--1936935	89	14.0	89	67	7	445	30	20	19	29	1.97
1937352--1937422	30	2.4	30	90	4	108	35	36	0	28	1.58
1942243--1942309	21	3.3	20	77	8	73	82	0	17	0	0.68
1942241--1942313	5	14.6	5	80	17	73	82	0	17	0	0.68
1942241--1942313	11	7.3	10	85	13	73	82	0	17	0	0.68
1944342--1944606	90	3.0	90	90	1	390	27	18	19	33	1.95
1944670--1944908	102	2.4	102	82	6	285	29	18	14	38	1.90
1944819--1944909	37	2.5	36	82	3	119	28	21	13	36	1.91
1945237--1946555	266	5.0	265	86	3	1609	30	20	19	29	1.97
1945482--1946508	44	23.5	44	67	8	362	31	20	19	28	1.97
1945237--1946555	129	10.0	129	82	4	1446	30	20	19	29	1.97
1945656--1946333	85	7.8	85	69	11	264	31	20	19	28	1.97
1946881--1946951	30	2.4	30	85	4	90	33	39	1	25	1.65
1950807--1950905	51	1.9	51	87	4	146	14	33	30	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1951029--1951069	10	4.1	10	84	12	57	31	29	0	39	1.57
1952150--1952253	50	2.1	50	81	0	118	24	29	29	16	1.96
1953519--1953575	30	1.9	30	89	3	89	29	33	1	35	1.68
1954519--1954548	13	2.4	13	94	5	53	60	0	0	40	0.97
1954850--1954931	30	2.7	31	68	19	73	18	14	10	56	1.67
1960247--1960287	18	2.2	19	83	12	50	39	2	7	51	1.43
1960896--1960970	30	2.5	30	84	4	98	30	32	1	36	1.66
1961261--1961306	2	23.0	2	100	0	92	50	0	0	50	1.00
1965921--1966010	17	5.4	17	78	14	82	81	1	17	0	0.76
1965928--1966010	10	8.3	10	75	10	71	81	0	18	0	0.68
1965928--1966003	29	2.9	27	84	13	88	81	0	18	0	0.69
1968037--1968321	90	3.2	90	89	3	414	28	18	20	32	1.96
1968441--1968594	37	4.3	36	81	7	163	28	19	14	37	1.91
1968474--1968589	37	3.2	37	87	2	180	26	19	15	37	1.92
1968441--1968594	73	2.2	70	89	5	229	28	19	14	37	1.91
1969159--1970143	44	22.5	44	68	9	417	30	20	20	28	1.98
1968921--1969226	133	2.3	133	84	3	411	29	19	20	31	1.97
1969128--1969316	90	2.1	88	86	3	254	29	19	21	30	1.97
1968977--1969452	222	2.1	222	89	1	724	30	19	19	30	1.97
1969200--1970194	129	7.6	129	84	4	1160	30	20	20	28	1.98
1969166--1970194	388	2.6	392	85	4	1340	30	20	20	28	1.98
1970520--1970589	30	2.4	30	85	7	90	34	40	1	24	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1974430--1974527	51	1.9	51	85	2	126	15	32	30	21	1.94
1974649--1974689	10	4.1	10	84	12	57	31	29	0	39	1.57
1977963--1978019	30	1.9	30	85	3	80	29	31	1	36	1.68
1981086--1981115	13	2.4	13	94	5	53	60	0	0	40	0.97
1981417--1981498	30	2.7	31	68	19	73	18	15	10	54	1.69
1985402--1985511	51	2.2	49	82	9	125	25	26	24	23	2.00
1987830--1987973	78	1.8	78	86	2	209	43	7	5	43	1.56
1995101--1995153	17	3.2	16	77	17	56	32	11	13	43	1.79
1995213--1995254	18	2.3	18	91	0	66	35	7	9	47	1.64
2003858--2003944	2	43.5	2	100	0	174	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11