genome.fa.s8214.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008214.1 Hibiscus syriacus cultivar Beakdansim tig00110840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2117680

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2003968--2004171	83	2.4	84	88	3	286	28	18	19	33	1.95
2003971--2004207	85	2.8	83	85	3	280	29	18	18	33	1.95
2004179--2004243	13	5.0	13	92	0	112	30	12	23	33	1.91
2004179--2004243	26	2.5	26	100	0	130	30	12	23	33	1.91
2007382--2007453	2	36.0	2	97	0	135	51	0	0	48	1.00
2007368--2007459	8	12.3	7	86	11	73	50	2	1	46	1.20
2007561--2007701	2	70.0	2	67	17	51	48	2	9	40	1.47
2007987--2008081	42	2.3	42	87	7	131	42	25	0	32	1.55
2008527--2008683	79	2.0	79	86	2	217	44	7	5	43	1.53
2010632--2010677	20	2.2	21	77	11	51	36	8	8	45	1.66
2014763--2014824	30	2.0	29	84	9	79	59	6	3	30	1.38
2015384--2015515	32	4.1	32	80	5	142	28	23	28	19	1.98
2023473--2023632	67	2.3	69	79	7	173	22	22	18	36	1.95
2027383--2027417	16	2.3	15	95	5	61	60	0	5	34	1.21
2030173--2030210	3	12.7	3	100	0	76	31	0	0	68	0.90
2031203--2031255	21	2.5	21	84	0	70	20	26	18	33	1.96
2031245--2031318	20	3.7	20	72	3	76	39	18	18	22	1.93
2031515--2031589	22	3.4	22	94	0	105	22	40	16	21	1.91
2031927--2032000	33	2.2	34	83	7	89	14	20	24	40	1.90
2031940--2032021	20	4.5	19	73	18	75	13	18	23	45	1.84
2031987--2032029	20	2.2	20	82	0	50	13	16	20	48	1.80
2033886--2033937	20	2.6	20	96	0	95	38	25	19	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2033909--2034034	33	3.8	33	78	7	128	45	19	19	15	1.86
2033909--2034023	34	3.4	33	79	7	133	45	20	20	14	1.85
2033909--2034034	67	1.9	67	91	0	207	45	19	19	15	1.86
2034047--2034202	20	8.4	20	74	18	133	15	19	22	42	1.88
2034069--2034150	33	2.5	33	81	2	101	13	18	21	46	1.83
2034686--2034790	21	5.0	21	72	3	86	21	37	18	22	1.94
2034711--2034793	42	2.0	42	83	4	105	21	38	19	20	1.93
2036169--2036203	14	2.5	14	85	0	52	31	0	20	48	1.50
2036311--2036391	33	2.4	33	87	2	108	40	19	24	14	1.90
2036401--2036496	33	2.9	34	85	3	131	13	23	19	42	1.87
2036470--2036556	40	2.2	40	89	4	131	19	21	22	35	1.96
2036468--2036542	20	3.8	20	94	0	132	17	22	25	34	1.96
2038985--2039038	24	2.2	24	93	0	90	40	20	18	20	1.91
2038985--2039052	24	2.8	24	84	0	64	38	20	17	23	1.93
2041258--2041302	17	2.6	17	85	3	54	51	24	0	24	1.49
2043256--2043317	20	2.9	21	85	9	72	17	25	33	22	1.96
2049096--2049143	20	2.4	20	85	0	69	25	18	25	31	1.98
2049159--2049204	21	2.2	21	88	0	65	36	17	28	17	1.92
2050619--2050740	39	3.2	38	74	14	115	50	1	12	36	1.50
2053267--2053343	37	2.1	37	83	9	95	46	1	3	48	1.28
2053329--2053374	17	2.7	17	96	0	83	41	6	4	47	1.49
2055038--2055125	42	2.1	42	95	0	158	38	14	3	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2056041--2056160	29	4.1	29	92	0	195	34	1	19	45	1.60
2057223--2057272	25	2.0	25	84	0	64	26	6	22	46	1.74
2063416--2063536	29	4.2	29	86	0	170	30	5	19	43	1.75
2066073--2066112	15	2.7	15	84	0	53	45	7	0	47	1.31
2066342--2066406	18	3.6	18	97	0	121	36	16	21	24	1.94
2067229--2067414	36	5.2	36	83	5	121	27	17	13	40	1.88
2067325--2067385	19	3.3	19	68	25	58	22	21	13	42	1.87
2067287--2067424	36	3.8	36	88	3	197	24	21	13	39	1.90
2067229--2067424	72	2.7	72	81	6	211	27	17	13	41	1.87
2067683--2067876	68	2.9	67	81	6	200	28	22	12	36	1.91
2068100--2068571	139	3.4	138	79	4	520	29	26	15	27	1.96
2069700--2069755	29	1.9	29	92	0	94	30	16	3	50	1.62
2069979--2070056	16	5.0	16	71	6	61	30	26	5	37	1.78
2070192--2070227	16	2.2	16	90	0	54	27	11	5	55	1.57
2076484--2076523	3	13.3	3	83	0	53	35	5	0	60	1.19
2081579--2081626	14	3.4	14	76	0	60	16	10	14	58	1.63
2081809--2081834	13	2.0	13	100	0	52	15	15	15	53	1.73
2081805--2081857	23	2.3	23	90	0	79	13	15	16	54	1.71
2086948--2087512	289	2.0	289	98	0	1094	29	13	26	31	1.93
2089874--2089912	2	20.0	2	94	5	71	51	0	0	48	1.00
2090585--2090611	12	2.2	12	100	0	54	55	0	7	37	1.28
2091806--2091834	15	1.9	15	100	0	58	27	27	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2091918--2092027	29	3.8	29	92	2	177	17	20	16	46	1.84
2094192--2094217	3	8.7	3	100	0	52	69	0	0	30	0.89
2094543--2095254	121	5.8	121	88	2	996	24	16	25	34	1.95
2094543--2095254	245	2.9	245	90	1	1099	24	16	25	34	1.95
2094543--2095253	366	1.9	367	89	2	1095	24	16	25	34	1.95
2095213--2095374	65	2.6	64	88	4	233	27	14	21	37	1.92
2095350--2095600	64	3.9	64	91	0	403	29	11	22	36	1.89
2096192--2096268	33	2.4	31	79	10	91	36	23	14	25	1.93
2097340--2097395	16	3.4	16	75	24	55	5	17	0	76	0.96
2097342--2097395	17	3.2	17	73	19	51	5	16	0	77	0.94
2100118--2100155	16	2.3	17	90	4	60	63	7	5	23	1.42
2100366--2100431	30	2.2	29	86	2	87	62	9	7	21	1.50
2100844--2100895	22	2.4	22	100	0	104	19	53	17	9	1.70
2101223--2101271	3	16.3	3	100	0	98	67	0	0	32	0.91
2101704--2101737	3	10.7	3	87	12	50	70	0	0	29	0.87
2101691--2101744	17	3.2	16	78	19	56	68	1	1	27	1.10
2101700--2101734	10	3.5	10	85	14	54	71	0	0	28	0.86
2101700--2101737	13	2.9	13	88	11	60	71	0	0	28	0.87
2101691--2101744	20	2.7	20	91	8	83	68	1	1	27	1.10
2102547--2102576	2	15.5	2	93	6	53	46	0	0	53	1.00
2103992--2104033	18	2.2	20	83	8	52	26	2	2	69	1.13
2104653--2104677	13	1.9	13	100	0	50	32	24	8	36	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2105186--2105241	14	4.1	14	82	13	64	48	0	0	51	1.00
2105186--2105246	26	2.4	25	84	10	79	49	0	0	50	1.00
2105668--2105703	18	1.9	19	88	5	56	66	22	11	0	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!