genome.fa.s8214.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008214.1 Hibiscus syriacus cultivar Beakdansim tig00110840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2117680

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189124--189162	21	1.9	21	89	5	62	43	5	5	46	1.48
190236--190272	14	2.6	14	100	0	74	45	5	0	48	1.25
191631--191703	16	4.6	16	77	13	62	43	5	1	49	1.34
191607--191672	22	2.9	23	84	6	73	40	4	0	54	1.21
191590--191683	22	4.4	22	71	18	65	41	6	0	52	1.27
191651--191709	31	1.9	31	86	6	84	42	6	1	49	1.39
192281--192322	21	2.0	20	86	4	57	14	14	30	40	1.85
194196--194243	18	2.7	19	78	12	57	27	20	10	41	1.85
196025--196181	65	2.4	65	81	4	183	30	18	22	28	1.97
198710--198748	2	19.5	2	100	0	78	48	0	0	51	1.00
203768--203967	31	6.5	31	79	4	224	51	16	10	22	1.74
203797--203998	93	2.2	92	88	1	289	50	14	10	24	1.74
204563--204606	17	2.5	18	85	7	63	40	11	20	27	1.86
210822--210990	60	2.8	60	78	15	156	33	22	4	39	1.75
216689--216734	19	2.4	19	100	0	92	39	10	19	30	1.86
231136--231211	35	2.2	35	92	2	127	44	23	0	31	1.54
231152--231230	35	2.3	35	77	0	86	43	29	1	26	1.63
231406--231677	148	1.9	144	88	3	409	36	6	8	48	1.60
232608--232680	38	1.9	38	91	2	121	12	8	36	42	1.72
233482--233579	36	2.8	36	81	7	110	32	1	20	45	1.58
234239--234356	37	3.1	36	73	15	103	44	3	8	44	1.51
234207--234356	78	1.9	79	88	1	230	45	3	7	44	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234524--234567	23	1.9	23	86	9	63	50	2	0	47	1.13
234641--234666	2	13.0	2	100	0	52	50	0	0	50	1.00
234744--235201	77	6.0	77	86	7	602	45	2	7	44	1.45
234744--235201	38	12.0	38	89	5	610	45	2	7	44	1.45
234744--235201	115	4.0	114	87	6	601	45	2	7	44	1.45
235247--235284	3	12.7	3	83	10	51	34	0	2	63	1.09
235244--235290	21	2.3	20	85	7	67	34	0	2	63	1.06
235244--235287	18	2.4	17	85	14	61	34	0	2	63	1.07
235241--235304	21	3.3	19	75	24	62	32	0	1	65	1.02
245635--245759	23	5.7	23	86	8	156	22	17	36	24	1.95
245981--246020	21	1.9	21	84	0	53	52	10	10	27	1.66
249308--249362	2	27.5	2	100	0	110	49	0	0	50	1.00
251174--251263	3	30.7	3	73	18	50	25	3	1	70	1.10
251177--251279	37	2.8	34	75	16	91	23	5	0	69	1.15
252088--252128	20	2.0	20	86	9	57	43	0	4	51	1.23
252756--252783	10	2.8	10	100	0	56	17	0	0	82	0.68
253006--253040	2	17.5	2	100	0	70	48	0	0	51	1.00
253081--253159	40	2.0	41	85	7	108	43	3	10	43	1.56
253100--253163	20	3.2	20	75	16	62	45	1	9	43	1.45
253507--253535	14	2.1	14	100	0	58	13	0	13	72	1.13
253959--253997	20	2.0	20	84	0	51	33	28	7	30	1.85
254394--254453	21	2.6	24	84	10	81	53	0	6	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254527--254563	2	18.5	2	100	0	74	48	0	0	51	1.00
254734--254839	39	2.7	39	75	18	121	44	1	16	37	1.58
255222--255290	31	2.2	31	89	0	102	46	7	8	37	1.63
257371--257424	23	2.3	24	78	18	60	59	1	1	37	1.19
257543--257584	19	2.3	19	88	12	61	71	2	2	23	1.10
258312--258471	64	2.5	64	90	0	248	35	14	16	33	1.89
258376--258602	118	1.9	118	86	1	321	38	16	14	30	1.88
259049--259073	13	1.9	13	100	0	50	28	0	0	72	0.86
269739--269765	2	13.5	2	100	0	54	48	0	0	51	1.00
269894--269968	2	37.5	2	100	0	150	49	0	0	50	1.00
271082--271128	24	2.0	24	95	0	85	31	14	12	40	1.84
272415--272523	55	2.0	55	87	0	155	36	15	10	37	1.81
275249--275289	12	3.6	12	83	12	59	65	0	0	34	0.93
275273--275317	22	2.1	21	91	4	72	62	4	0	33	1.15
278925--279063	28	4.8	30	75	16	116	57	0	3	38	1.21
278930--279032	25	3.6	30	71	18	85	61	0	1	35	1.14
279063--279127	29	2.3	29	86	2	87	50	1	6	41	1.36
280810--280849	18	2.2	17	83	12	53	77	0	2	20	0.88
280815--280850	9	3.9	9	96	3	63	80	0	0	19	0.71
285805--285834	15	2.0	15	100	0	60	53	6	0	40	1.27
287797--287909	3	37.7	3	90	0	181	35	2	0	61	1.10
287905--287945	11	3.8	10	87	9	55	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289339--289378	17	2.4	17	86	0	53	57	0	0	42	0.98
289357--289394	13	2.9	13	81	11	51	42	0	0	57	0.98
290012--290121	28	3.9	28	72	12	73	28	5	2	63	1.30
292532--293776	114	10.9	113	95	1	1782	36	13	20	29	1.91
294092--294222	3	43.7	3	92	0	217	34	3	0	62	1.11
294218--294256	11	3.8	10	86	10	53	56	2	0	41	1.13
294352--294389	14	2.7	14	100	0	76	13	52	21	13	1.73
295085--295123	9	3.8	10	84	15	53	56	2	0	41	1.13
295780--295819	17	2.4	17	86	0	53	57	0	0	42	0.98
295798--295835	13	2.9	13	81	11	51	42	0	0	57	0.98
301145--301178	18	1.9	18	88	5	52	17	26	29	26	1.98
305199--305224	6	4.3	6	100	0	52	0	34	0	65	0.93
306259--306319	20	3.3	20	66	29	62	47	18	6	27	1.73
306225--306332	35	2.9	37	90	6	166	44	19	5	30	1.73
310836--310951	35	3.2	36	86	6	164	43	18	3	33	1.67
311483--311514	14	2.2	15	94	5	57	46	0	9	43	1.35
313165--313377	115	1.9	115	93	0	372	42	7	9	41	1.64
320453--320503	23	2.3	22	80	12	59	56	0	0	43	0.99
320417--320770	111	3.2	112	83	12	430	50	3	4	42	1.38
320417--320770	112	3.2	111	87	9	460	50	3	4	42	1.38
320704--320733	12	2.6	12	94	5	53	56	0	0	43	0.99
320670--320733	23	2.8	23	73	15	60	51	0	1	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322015--322390	188	2.0	186	97	2	707	22	17	11	48	1.79
327037--327064	12	2.3	12	100	0	56	39	0	0	60	0.97
326991--327133	68	2.1	71	90	4	229	33	0	10	55	1.39
327849--327921	38	1.9	38	83	10	96	23	10	0	65	1.24
327873--327921	19	2.5	20	77	9	57	20	8	0	71	1.11
331977--332044	23	2.6	27	75	20	81	47	13	16	23	1.81
332922--333118	69	2.8	68	80	14	211	30	1	11	56	1.42
332945--333052	25	4.6	23	67	18	71	31	0	12	55	1.38
333827--333869	15	2.8	16	83	13	54	16	4	0	79	0.90
333825--333868	16	2.6	18	79	20	58	18	4	0	77	0.94
337209--337241	17	1.9	17	88	11	50	33	3	0	63	1.10
338027--338078	21	2.5	21	87	6	70	28	19	25	26	1.98
356772--356822	20	2.6	19	79	14	59	29	15	27	27	1.96
366330--366398	21	3.1	22	85	10	79	28	15	26	28	1.96
369389--369417	13	2.2	13	100	0	58	44	13	0	41	1.44
373809--373900	29	3.1	30	76	7	91	36	38	5	19	1.75
380024--380100	17	4.4	18	93	3	131	32	5	27	35	1.79
380024--380100	35	2.2	35	93	4	129	32	5	27	35	1.79
390227--390288	23	2.9	21	80	7	72	22	35	24	17	1.95
390270--390309	21	1.9	21	89	0	62	25	40	25	10	1.86
392850--392885	17	2.0	19	89	10	58	55	0	2	41	1.14
392868--392892	11	2.3	11	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394842--394928	35	2.5	34	77	18	90	56	9	6	27	1.56
394919--394997	34	2.3	35	85	10	101	60	16	1	21	1.42
395528--395602	33	2.3	33	97	0	141	13	20	56	10	1.66
397324--397385	17	3.8	17	72	23	51	64	1	0	33	1.03
399283--399372	45	2.0	44	95	2	162	40	15	12	32	1.84
399412--399579	90	1.9	90	89	1	264	39	11	13	36	1.80
406624--406693	36	2.0	33	81	8	77	54	4	4	37	1.40
407361--407404	22	2.0	23	86	4	63	43	15	0	40	1.47
417273--417302	15	1.9	16	93	6	53	20	0	13	66	1.24
438927--439246	55	5.8	55	84	2	383	34	17	17	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11