genome.fa.s8214.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008214.1 Hibiscus syriacus cultivar Beakdansim tig00110840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2117680

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050881--1050938	2	29.5	2	89	10	93	48	1	0	50	1.11
1053133--1053190	23	2.5	23	80	11	64	44	1	1	51	1.21
1053133--1053191	12	5.1	11	76	15	57	44	1	1	52	1.21
1054676--1054716	2	20.5	2	100	0	82	51	0	0	48	1.00
1056743--1056822	14	6.3	14	72	21	86	8	15	25	51	1.71
1056744--1056829	24	3.6	24	93	0	145	9	13	24	52	1.70
1056743--1056822	38	2.1	37	84	13	101	8	15	25	51	1.71
1056744--1056842	24	4.1	24	92	0	144	11	13	22	53	1.70
1057325--1057412	23	3.8	23	90	0	113	27	23	22	26	2.00
1057325--1057411	11	7.6	11	74	7	75	27	22	22	26	2.00
1057325--1057436	46	2.4	47	80	1	118	25	23	23	27	2.00
1057338--1057436	23	4.2	24	85	3	87	26	23	24	26	2.00
1057635--1057696	16	3.9	16	95	0	115	8	11	24	56	1.61
1058305--1058461	30	5.2	30	96	0	287	34	23	17	24	1.96
1058688--1058946	4	65.2	4	97	1	495	49	24	0	25	1.50
1059840--1059889	19	2.6	19	100	0	100	22	30	18	30	1.97
1064316--1064472	30	5.2	30	96	0	287	33	24	17	23	1.96
1064700--1064736	4	9.2	4	93	0	65	45	27	0	27	1.54
1066841--1066882	18	2.3	19	80	12	52	54	0	2	42	1.13
1070584--1070634	26	2.0	26	96	3	95	29	27	11	31	1.92
1073184--1073261	35	2.2	35	80	15	90	55	8	8	26	1.61
1073481--1073542	3	20.7	3	79	0	70	4	30	25	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073484--1073545	15	4.1	15	87	0	88	6	30	24	38	1.80
1075602--1075642	18	2.3	18	91	4	66	63	2	4	29	1.28
1076882--1077064	75	2.4	75	85	5	244	40	9	14	34	1.78
1077094--1077262	75	2.3	75	89	0	257	39	13	15	32	1.86
1076893--1077553	198	3.4	196	77	9	662	38	12	14	34	1.84
1077170--1077481	98	3.2	97	85	3	428	39	13	13	34	1.83
1077433--1077504	23	3.1	23	93	0	117	36	18	13	31	1.90
1077335--1077553	121	1.8	121	86	0	321	39	12	13	34	1.83
1077535--1077957	154	2.8	154	95	1	735	42	11	10	35	1.75
1078982--1079155	85	2.0	85	97	0	330	33	14	13	37	1.86
1079693--1079738	20	2.5	19	86	10	60	43	6	10	39	1.66
1079703--1079751	20	2.5	20	96	0	89	42	8	10	38	1.68
1079821--1079860	19	2.1	20	86	9	57	22	5	20	52	1.65
1085074--1085114	18	2.3	18	91	4	66	29	4	2	63	1.28
1086823--1086896	24	3.1	23	71	13	60	25	4	6	63	1.37
1091485--1091525	21	2.0	20	85	4	55	51	2	0	46	1.14
1091655--1091710	29	1.9	29	96	0	103	30	21	10	37	1.87
1091754--1091783	15	1.9	16	93	6	53	30	0	0	70	0.88
1091986--1092028	16	2.6	17	85	7	61	6	11	44	37	1.68
1092204--1092236	2	16.5	2	100	0	66	51	0	0	48	1.00
1092379--1092435	16	3.6	16	87	0	78	19	14	17	49	1.80
1092362--1092445	32	2.7	32	71	1	80	15	13	22	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093041--1093115	21	3.7	20	73	8	62	18	18	26	36	1.94
1093152--1093197	21	2.2	20	84	3	56	36	8	23	30	1.85
1096256--1096387	66	2.0	66	98	0	255	29	10	28	31	1.90
1097019--1097051	2	16.5	2	100	0	66	51	0	0	48	1.00
1097225--1097252	2	14.0	2	100	0	56	50	0	0	50	1.00
1105177--1105392	43	5.0	43	92	2	317	25	31	18	25	1.97
1108815--1108851	20	1.9	19	89	10	58	51	0	18	29	1.47
1111339--1111381	18	2.4	19	80	11	54	37	6	2	53	1.41
1111482--1111595	39	2.9	39	80	12	135	35	16	0	48	1.47
1115437--1115528	44	2.1	44	89	0	139	43	27	7	21	1.79
1124537--1124561	4	6.2	4	100	0	50	24	0	0	76	0.80
1125405--1125439	11	2.9	12	87	12	54	60	0	0	40	0.97
1126073--1126312	128	1.9	128	91	0	399	45	10	10	34	1.72
1126291--1126333	21	2.2	19	83	8	50	62	0	4	32	1.15
1126307--1126335	14	2.1	14	100	0	58	62	0	0	37	0.96
1126431--1126486	14	4.1	14	80	17	57	44	1	0	53	1.11
1127096--1127154	21	2.6	22	85	15	84	50	0	6	42	1.28
1127096--1127161	21	3.0	21	80	12	78	50	0	6	43	1.27
1127213--1127244	8	4.1	8	92	8	57	53	9	0	37	1.34
1127213--1127244	15	2.1	16	94	5	57	53	9	0	37	1.34
1128212--1128265	20	2.7	20	100	0	108	27	16	29	25	1.97
1131144--1131190	22	2.1	23	88	4	69	19	23	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1131155--1131197	22	2.0	22	85	0	59	20	20	16	41	1.90
1132348--1132400	22	2.3	23	90	3	81	20	24	16	37	1.93
1132639--1132700	25	2.5	25	82	10	65	37	12	8	41	1.73
1132742--1132811	29	2.3	31	87	7	108	38	5	25	30	1.79
1133047--1133095	23	2.0	25	88	7	75	20	28	26	24	1.99
1133047--1133142	25	4.0	25	73	15	76	26	23	22	27	2.00
1134004--1134042	19	2.1	19	85	9	53	69	0	0	30	0.89
1134365--1134432	31	2.2	31	94	0	118	52	11	2	32	1.53
1141260--1141311	20	2.6	20	87	6	70	36	17	23	23	1.95
1142093--1142277	68	2.7	68	90	0	280	31	15	21	30	1.95
1142226--1142439	81	2.7	80	83	3	243	36	11	23	28	1.89
1145869--1146172	147	2.0	151	87	5	440	29	15	14	40	1.86
1147754--1147821	2	36.0	2	88	11	108	48	0	0	51	1.00
1149615--1149914	5	60.8	5	65	20	84	74	1	7	17	1.09
1149662--1149762	23	4.2	24	71	14	75	76	0	10	11	1.08
1149698--1149918	4	53.8	4	69	20	72	74	0	5	19	1.06
1149701--1149916	19	10.7	20	68	22	66	75	0	5	18	1.06
1149687--1149761	37	2.0	37	87	10	109	76	0	9	14	1.03
1149693--1149893	41	5.1	38	70	18	103	74	0	6	18	1.07
1149709--1149913	25	7.8	25	71	16	109	74	0	5	19	1.06
1149975--1150003	11	2.5	12	88	11	51	89	10	0	0	0.48
1149978--1150003	11	2.4	11	100	0	52	92	7	0	0	0.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1150068--1150101	2	16.5	2	87	6	50	50	2	2	44	1.32
1150188--1150225	20	1.9	19	85	15	51	71	5	0	23	1.07
1151199--1151249	11	4.6	11	75	15	52	50	3	0	45	1.20
1151199--1151249	16	3.2	15	82	17	59	50	3	0	45	1.20
1151201--1151243	19	2.3	19	83	0	50	51	4	0	44	1.22
1152911--1153071	80	2.0	80	97	2	306	30	12	22	34	1.91
1153352--1153432	6	13.5	6	75	17	71	81	0	2	16	0.80
1153302--1153434	45	3.1	41	80	13	110	75	0	3	20	0.95
1153302--1153437	37	3.6	36	79	14	125	75	0	4	19	0.97
1153333--1153437	35	2.9	36	82	15	126	78	0	2	19	0.88
1153344--1153434	17	5.1	17	79	15	103	81	0	2	16	0.79
1153344--1153437	35	2.6	36	85	10	129	80	0	3	15	0.83
1153341--1153434	8	11.2	8	75	17	84	80	0	2	17	0.80
1153348--1153432	10	8.3	10	76	12	75	81	0	2	16	0.80
1153346--1153436	29	3.0	29	80	15	89	80	0	3	16	0.85
1153365--1153450	25	3.2	28	69	19	51	81	0	4	13	0.84
1153480--1153527	25	2.0	24	84	8	62	79	10	2	8	1.02
1155649--1155673	13	1.9	13	100	0	50	64	16	4	16	1.44
1155904--1155941	2	19.0	2	94	0	67	47	0	0	52	1.00
1162023--1162138	61	1.9	61	90	0	187	25	16	25	31	1.96
1162257--1162468	88	2.4	88	89	3	322	37	7	24	30	1.83
1162257--1162468	43	4.8	45	89	4	326	37	7	24	30	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1181504--1181536	16	2.1	16	94	0	57	57	21	15	6	1.59
1181610--1181668	15	3.9	15	82	6	66	57	22	10	10	1.61
1181610--1181675	15	4.3	15	78	7	53	57	21	9	12	1.62
1182300--1182326	14	1.9	14	100	0	54	51	14	14	18	1.76
1188574--1188624	25	2.1	23	82	7	57	45	1	1	50	1.24
1188622--1188742	27	4.2	27	76	14	109	42	0	2	54	1.19
1190347--1190414	31	2.2	31	89	2	102	38	8	11	41	1.73
1198369--1198428	22	2.7	23	86	2	86	38	8	16	36	1.79
1205716--1205757	18	2.4	17	84	7	57	50	4	0	45	1.23
1205706--1205772	22	3.0	22	66	25	52	46	4	0	49	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11