genome.fa.s8214.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008214.1 Hibiscus syriacus cultivar Beakdansim tig00110840_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2117680

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1291 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443154--443369	45	4.8	45	90	3	312	39	7	21	31	1.82
459270--459318	23	2.1	23	88	0	71	40	8	18	32	1.80
459233--459395	87	1.9	87	96	0	299	41	13	14	30	1.85
459400--460166	200	3.8	196	84	5	880	29	13	16	40	1.87
460340--460398	24	2.4	24	91	2	91	49	11	0	38	1.40
460348--460384	18	2.1	18	89	0	56	51	10	0	37	1.37
461658--461701	3	14.7	3	85	0	61	27	31	2	38	1.69
462869--462912	15	2.9	15	80	12	63	27	4	43	25	1.74
463258--464356	199	5.5	199	92	0	1741	28	14	15	41	1.86
463258--464356	399	2.8	398	92	0	1777	28	14	15	41	1.86
464730--464774	19	2.4	19	96	0	81	57	8	0	33	1.30
466245--466283	18	2.2	18	85	0	51	7	38	2	51	1.44
466691--466733	18	2.4	18	88	0	59	9	51	4	34	1.55
466971--467027	24	2.5	21	76	17	60	49	8	1	40	1.44
468453--468497	16	2.9	15	90	9	72	13	35	24	26	1.92
468453--468497	7	5.8	8	85	15	67	13	35	24	26	1.92
468453--468497	23	2.0	23	91	8	74	13	35	24	26	1.92
469805--469885	43	1.9	42	94	2	144	50	3	22	23	1.65
470992--471129	24	5.8	24	88	3	179	24	13	20	41	1.89
472445--472537	19	4.9	18	80	7	105	33	15	3	48	1.61
472445--472537	37	2.5	37	85	7	116	33	15	3	48	1.61
473003--473779	182	4.3	181	85	4	1023	27	14	12	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473003--473779	360	2.1	362	88	3	1136	27	14	12	44	1.82
474315--474353	19	2.1	19	85	0	51	61	5	0	33	1.18
483308--483348	20	2.0	20	90	0	64	46	17	12	24	1.82
485217--485255	20	2.0	20	100	0	78	33	15	20	30	1.94
485222--485265	20	2.2	20	87	0	61	36	18	18	27	1.94
485794--485852	27	2.1	28	84	12	77	59	0	0	40	0.97
487262--487325	3	21.7	3	87	9	96	65	0	1	32	1.02
487465--487750	120	2.4	120	87	4	384	23	17	16	42	1.89
487672--488185	226	2.3	222	87	7	733	29	18	14	37	1.90
487672--488185	113	4.6	110	85	5	666	29	18	14	37	1.90
488150--488209	17	3.4	17	68	22	52	15	21	13	50	1.78
488133--488224	36	2.6	36	87	5	143	18	20	10	50	1.77
488020--488334	143	2.1	149	87	6	455	26	19	13	41	1.88
489065--489282	115	1.9	114	85	4	305	30	21	14	33	1.93
489168--489550	93	4.1	93	93	0	642	34	20	15	29	1.93
490558--490625	10	6.5	10	77	6	64	0	17	0	82	0.67
490545--490634	25	3.3	28	84	14	118	0	20	0	80	0.72
490545--490632	18	5.0	17	79	15	81	0	19	0	80	0.71
497977--498008	15	2.1	15	94	0	55	46	6	18	28	1.73
501974--502031	27	2.1	28	84	15	77	58	0	0	41	0.98
502015--502052	18	2.1	18	85	9	51	36	2	2	57	1.26
503446--503502	3	19.3	3	96	3	107	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504550--504661	59	1.9	59	83	9	147	39	20	9	30	1.85
505540--505637	28	3.4	29	82	12	105	55	1	0	43	1.06
505611--505701	18	5.5	18	67	21	65	50	1	1	47	1.15
505609--505711	23	4.2	24	71	22	72	50	0	0	47	1.14
505616--505701	32	2.6	32	76	14	86	50	1	1	47	1.16
505663--505712	21	2.3	23	86	10	70	54	0	0	46	1.00
506448--506491	21	2.1	21	95	0	79	50	11	0	38	1.39
506659--506691	15	2.3	15	94	5	59	60	0	0	39	0.97
511268--511321	27	2.0	27	96	0	99	35	3	42	18	1.68
512800--512864	33	2.0	33	96	0	121	43	10	18	27	1.83
513299--513364	28	2.4	28	89	0	96	39	7	21	31	1.81
518241--518350	45	2.4	45	86	7	152	34	20	5	40	1.75
518440--519405	59	16.4	57	78	8	735	30	21	10	38	1.86
518511--518625	60	1.9	61	84	8	155	28	20	13	37	1.90
518440--519405	118	8.2	118	80	5	918	30	21	10	38	1.86
518654--519416	177	4.3	177	96	0	1337	31	21	9	37	1.86
522353--522408	3	18.7	3	100	0	112	32	0	0	67	0.91
522448--522486	21	1.9	20	85	15	53	41	23	10	25	1.86
524047--524105	30	2.0	30	93	6	102	35	3	16	44	1.65
524185--524241	21	2.7	21	86	0	87	24	36	19	19	1.94
524227--524269	22	1.9	23	90	4	70	30	30	18	20	1.97
524304--524378	20	3.7	20	80	3	87	17	28	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524304--524386	41	2.0	41	88	0	121	18	26	25	30	1.98
525669--525721	19	2.7	19	85	8	63	45	5	13	35	1.67
530190--530255	24	2.8	24	83	4	71	25	28	18	27	1.98
532377--532464	45	1.9	46	88	2	133	27	22	19	30	1.98
534046--534070	12	2.1	12	100	0	50	36	24	16	24	1.94
533919--534262	170	2.0	171	97	0	645	37	18	17	27	1.93
534772--535739	59	16.4	59	77	7	865	29	21	10	38	1.86
534986--535748	177	4.3	177	93	0	1294	30	21	10	38	1.86
541116--541140	12	2.1	12	100	0	50	36	24	16	24	1.94
541481--541581	45	2.2	45	91	3	159	36	20	5	36	1.77
541886--542285	59	6.8	59	83	4	484	30	21	10	37	1.86
546924--546962	17	2.3	17	86	8	53	38	0	2	58	1.12
548067--548211	51	2.8	51	79	12	129	18	32	26	22	1.97
551805--551891	35	2.5	34	80	12	97	55	10	8	26	1.61
552112--552152	9	4.6	9	81	0	55	12	36	19	31	1.89
554011--554338	111	3.0	111	94	2	558	43	11	8	36	1.71
554465--554504	10	4.0	10	84	12	55	37	0	27	35	1.57
554464--554503	20	2.1	19	90	4	62	37	0	25	37	1.56
554701--554763	29	2.1	29	82	2	72	28	14	28	28	1.95
555269--555301	12	2.6	13	80	9	50	30	15	9	45	1.77
555564--555597	15	2.3	15	94	0	59	23	8	14	52	1.69
563834--563924	2	45.5	2	100	0	182	0	0	49	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565727--565766	12	3.3	12	86	10	55	2	42	0	55	1.13
565697--565766	27	2.6	27	76	0	77	2	35	1	60	1.21
565769--565807	15	2.5	15	87	8	51	0	33	0	66	0.92
566489--566649	83	1.9	83	92	2	270	45	8	4	40	1.55
570147--570201	12	4.8	12	74	17	53	25	0	9	65	1.22
573079--573128	26	2.0	25	88	4	73	48	6	0	46	1.27
573326--573360	2	17.5	2	100	0	70	51	0	0	48	1.00
573167--573499	181	1.8	180	88	1	497	43	7	7	41	1.62
575067--575102	18	2.0	18	88	0	54	27	13	8	50	1.71
579502--579552	21	2.4	21	78	15	61	72	5	0	21	1.05
579502--579552	22	2.4	21	77	6	59	72	5	0	21	1.05
581252--581312	11	5.5	11	68	0	50	59	0	3	37	1.14
581250--581330	22	3.7	22	96	0	144	58	0	6	35	1.23
583749--583780	6	5.5	6	96	3	57	15	0	12	71	1.14
595770--595843	33	2.2	33	100	0	148	33	18	14	32	1.92
596121--596325	44	4.6	44	72	3	144	31	20	20	27	1.97
595976--596706	133	5.6	131	86	3	926	31	21	18	28	1.97
600062--600135	37	2.0	36	84	7	96	50	0	2	47	1.15
600889--600941	17	3.1	17	83	0	61	49	1	0	49	1.12
601708--601769	19	3.2	19	79	6	63	33	6	8	51	1.57
602203--602254	25	2.1	25	82	10	63	55	1	5	36	1.35
602806--602865	31	1.9	32	89	3	95	46	0	5	48	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602805--602875	32	2.2	33	82	7	92	47	0	4	47	1.21
603693--603732	18	2.2	19	86	4	55	42	2	10	45	1.51
605443--605565	64	1.9	64	85	6	169	23	8	18	48	1.76
605769--605819	21	2.4	21	93	0	84	41	27	17	13	1.87
608062--608149	27	3.3	27	95	0	158	38	17	22	21	1.93
609208--609390	95	1.9	96	89	1	287	29	16	17	36	1.92
612507--612595	45	1.9	47	90	4	146	29	11	22	37	1.89
622232--622359	16	7.2	18	72	18	58	73	1	17	7	1.14
622251--622283	18	1.9	17	88	11	50	66	6	15	12	1.42
622255--622296	17	2.4	18	80	4	50	73	4	14	7	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11