Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008259.1 Hibiscus syriacus cultivar Beakdansim tig00110912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2373650

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1275 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2250247--2250295
14
3.5
13
78
13
53
28
16
8
46
1.75
2265001--2265038
18
2.1
18
90
0
58
42
26
26
5
1.76
2274130--2274160
2
15.5
2
100
0
62
51
48
0
0
1.00
2274292--2274335
22
2.0
22
86
0
61
36
22
20
20
1.95
2278098--2278138
14
2.8
14
85
7
55
53
4
14
26
1.61
2278156--2278219
26
2.4
27
73
17
62
60
10
10
17
1.57
2281683--2281793
15
7.4
15
69
4
71
37
7
18
36
1.78
2281685--2281792
30
3.6
30
83
7
112
37
7
18
37
1.79
2281915--2282037
48
2.6
47
83
2
167
19
24
25
30
1.98
2281915--2282039
24
5.3
24
80
7
148
19
24
25
30
1.98
2282139--2282175
19
1.9
19
94
0
65
59
0
8
32
1.27
2283673--2283716
17
2.7
16
85
3
61
2
11
6
79
1.01
2288042--2288894
138
6.1
139
83
5
998
43
14
13
29
1.83
2288034--2288894
289
3.1
277
84
5
1073
42
13
13
29
1.83
2291710--2291744
16
2.2
16
94
0
61
51
0
0
48
1.00
2293199--2293261
21
3.2
20
70
20
60
49
1
4
44
1.33
2293287--2293326
21
1.9
21
85
10
55
40
15
0
45
1.46
2293407--2293453
24
2.0
24
87
8
69
53
0
10
36
1.36
2293826--2295025
6
200.8
6
95
3
2165
49
16
0
33
1.47
2293845--2293894
8
6.4
8
75
13
50
50
20
0
30
1.49
2295112--2295157
24
1.9
24
82
8
58
45
0
13
41
1.43
2297080--2297126
21
2.2
21
85
11
60
51
2
8
38
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2296230--2297105
2
436.0
2
65
21
236
49
2
6
41
1.42
2296721--2297114
49
8.3
49
74
14
143
51
3
6
38
1.45
2297646--2297732
34
2.5
34
83
7
86
73
4
10
11
1.23
2297664--2297739
40
1.9
40
84
10
102
73
5
7
13
1.22
2297735--2298941
6
207.3
6
91
8
1995
66
0
0
33
0.92
2301474--2301505
6
5.7
6
89
10
50
0
15
0
84
0.63
2301474--2301505
11
2.8
12
90
9
50
0
15
0
84
0.63
2301544--2301569
10
2.6
10
100
0
52
0
7
0
92
0.39
2312026--2312050
12
2.1
12
100
0
50
84
0
8
8
0.79
2312018--2312112
37
2.5
37
81
6
100
74
3
7
14
1.16
2313773--2313825
20
2.7
19
88
5
79
35
7
5
50
1.54
2313790--2313873
22
3.9
22
86
7
86
34
7
2
55
1.40
2313749--2314249
43
12.1
41
70
20
218
36
7
1
54
1.38
2313790--2314249
41
11.1
42
70
21
225
36
7
1
54
1.36
2313853--2314183
25
12.6
25
69
23
118
36
7
0
54
1.35
2313893--2314171
7
39.7
7
67
28
84
35
8
1
54
1.37
2314039--2314130
22
4.2
22
82
10
109
36
7
0
55
1.29
2314137--2314181
23
2.0
23
95
0
81
42
6
0
51
1.28
2313796--2314187
66
6.0
67
71
18
210
36
7
1
54
1.37
2313848--2314214
154
2.3
155
79
12
414
37
7
1
54
1.35
2313848--2314260
161
2.6
166
74
20
363
37
7
0
53
1.35
2314145--2314260
2
59.0
2
68
19
57
43
5
0
50
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2314290--2314337
16
3.0
16
75
22
55
47
2
2
47
1.25
2314076--2314339
11
24.9
10
66
20
62
42
4
1
51
1.34
2314380--2314596
2
111.0
2
63
22
52
47
3
3
46
1.36
2314322--2314575
20
12.7
20
70
17
136
44
5
4
45
1.46
2314391--2314568
9
19.7
9
65
21
61
48
3
2
44
1.33
2314399--2314440
11
3.9
11
81
6
50
54
0
2
42
1.13
2314382--2314575
61
3.2
61
77
13
247
47
3
3
45
1.35
2314323--2314577
120
2.1
119
81
9
304
44
5
4
45
1.46
2314402--2314577
41
4.4
41
72
20
163
47
2
3
46
1.34
2314519--2314604
15
6.3
13
72
16
59
44
2
5
47
1.39
2314531--2314653
51
2.4
51
78
11
135
46
3
4
46
1.38
2314394--2314612
120
1.9
119
88
7
315
47
3
3
45
1.36
2315990--2316022
17
1.9
17
93
0
57
39
36
6
18
1.75
2317808--2317848
21
2.0
21
90
0
64
21
26
21
29
1.99
2318165--2318189
3
8.3
3
100
0
50
36
0
32
32
1.58
2319874--2320030
64
2.5
63
81
7
174
33
19
22
24
1.97
2320595--2320646
2
26.0
2
96
0
95
1
0
48
50
1.12
2321553--2321609
23
2.5
23
88
0
87
19
26
26
28
1.99
2326232--2326273
20
2.1
20
86
8
59
33
2
2
61
1.21
2329571--2329620
24
2.1
24
85
7
66
26
2
12
60
1.43
2339838--2339887
24
2.1
24
85
7
66
26
2
12
60
1.43
2342266--2342300
15
2.3
15
100
0
70
42
22
5
28
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2342667--2342717
24
2.2
23
89
3
75
33
21
27
17
1.96
2342687--2342809
23
5.3
23
80
4
124
34
23
25
16
1.95
2345138--2345222
23
3.7
23
80
3
91
32
20
20
27
1.97
2348663--2348707
19
2.4
18
82
10
54
24
6
2
66
1.27
2352120--2352162
19
2.3
19
84
8
52
44
4
9
41
1.57
2359431--2359474
22
2.0
22
90
0
70
18
4
11
65
1.40
2359629--2359660
12
2.6
13
85
14
50
53
0
6
40
1.26
2359937--2360014
2
40.5
2
92
7
135
50
0
0
50
1.00
2362874--2362913
16
2.5
16
100
0
80
50
30
15
5
1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!