genome.fa.s8259.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008259.1 Hibiscus syriacus cultivar Beakdansim tig00110912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2373650

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1275 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
247367--247407	21	1.9	22	85	5	57	51	12	2	34	1.52
250686--250727	20	2.2	20	86	4	59	30	16	11	40	1.85
253526--253895	45	8.2	45	90	0	560	25	21	13	40	1.89
254377--254417	20	2.0	20	100	0	82	19	21	14	43	1.87
254381--254430	20	2.5	20	90	0	73	22	20	14	44	1.86
254306--254527	115	1.9	115	91	1	365	23	23	13	39	1.90
260178--260406	43	5.2	43	82	7	257	24	19	11	43	1.85
260178--260406	87	2.6	87	85	5	293	24	19	11	43	1.85
260831--261006	90	1.9	91	80	3	203	26	25	11	36	1.91
270068--270110	19	2.2	20	87	4	61	23	9	9	58	1.58
277854--277941	37	2.4	36	81	11	106	44	13	18	23	1.85
277940--278995	55	19.2	55	80	2	875	31	18	21	28	1.97
277940--278995	165	6.4	165	80	4	995	31	18	21	28	1.97
285485--285615	32	3.3	42	66	27	113	27	1	11	59	1.41
285414--285619	75	2.7	75	96	1	376	27	1	12	58	1.42
286232--286274	4	10.5	4	82	5	50	20	4	0	74	1.00
286232--286276	21	2.1	21	87	0	63	22	4	0	73	1.01
291744--291782	6	6.8	6	88	5	55	15	2	0	82	0.79
291745--291817	5	13.8	5	77	12	58	15	4	2	78	1.02
291751--291817	16	4.2	16	77	9	66	14	4	2	77	1.05
293721--293951	76	3.0	76	88	6	317	27	1	12	58	1.45
294575--294616	17	2.4	18	92	4	68	21	7	0	71	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294642--294709	19	3.4	20	76	17	70	23	5	0	70	1.09
295677--295701	10	2.5	10	100	0	50	92	8	0	0	0.40
299670--299709	22	1.9	20	90	10	62	50	5	2	42	1.37
307362--307395	12	2.8	12	90	0	59	26	11	0	61	1.30
308059--308113	28	1.9	29	85	3	76	36	16	9	38	1.80
312096--312327	128	1.8	128	80	9	285	37	15	15	31	1.89
312536--312576	14	2.6	16	85	14	50	41	0	12	46	1.41
313207--313287	34	2.3	36	83	12	98	48	0	0	51	1.00
313584--313608	3	8.3	3	100	0	50	0	0	32	68	0.90
313607--313652	12	3.8	12	88	2	65	10	15	47	26	1.78
316933--316970	14	2.8	14	84	15	53	28	0	2	68	1.03
322596--322638	21	2.0	21	86	0	59	32	18	25	23	1.97
324186--324543	128	2.8	126	78	5	326	37	15	16	30	1.90
325589--325649	23	2.7	23	89	5	79	39	9	19	31	1.84
328235--328289	21	2.6	21	100	0	110	20	14	21	43	1.87
328911--328962	22	2.5	21	76	14	54	32	13	5	48	1.66
328913--328958	22	2.1	22	84	8	58	30	10	6	52	1.62
330334--330467	66	2.0	66	89	2	207	24	41	2	31	1.67
330616--330649	12	2.8	12	86	0	50	0	41	0	58	0.98
333004--333118	50	2.3	50	98	0	221	33	13	9	42	1.77
333053--333601	184	3.0	183	88	1	794	29	13	12	43	1.81
333054--333601	183	3.0	183	88	1	801	29	13	12	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333800--333858	31	1.9	31	96	0	109	23	13	25	37	1.92
335338--335398	2	30.5	2	100	0	122	49	0	0	50	1.00
337127--337204	29	2.6	30	78	11	81	43	6	14	35	1.71
343143--343183	21	2.0	21	85	9	57	51	0	0	48	1.00
343142--343186	22	2.0	22	83	8	56	53	0	0	46	1.00
343473--343509	6	6.2	6	100	0	74	51	16	0	32	1.45
344862--344924	2	31.5	2	100	0	126	49	0	0	50	1.00
347455--347568	21	5.4	21	74	15	110	21	18	22	37	1.94
347448--347575	42	3.0	42	93	0	211	22	18	22	35	1.95
347510--347576	21	3.3	19	76	15	71	23	20	20	34	1.97
348319--348345	6	4.5	6	100	0	54	0	14	51	33	1.43
348466--348637	21	8.3	21	79	12	194	34	26	19	19	1.96
348438--348626	42	4.5	42	89	2	256	35	23	20	20	1.96
348448--348565	23	5.5	23	67	19	74	38	22	17	21	1.93
348435--348645	61	3.4	61	78	12	223	34	23	20	21	1.97
348649--348697	21	2.3	21	92	0	80	16	20	28	34	1.94
354514--354717	109	1.9	109	84	4	277	49	14	18	18	1.80
355584--355644	11	5.5	11	76	0	68	8	9	39	42	1.68
355573--355648	22	3.5	22	92	0	125	7	7	36	47	1.62
357468--357630	83	2.0	83	83	2	211	33	16	15	34	1.91
361228--361274	24	1.9	25	86	4	69	51	2	0	46	1.13
361265--361330	24	2.7	24	80	17	66	48	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361460--361528	19	3.6	18	71	21	52	47	1	1	49	1.19
361523--361567	23	2.0	23	86	0	63	53	2	2	42	1.25
361641--361695	22	2.6	21	86	11	69	50	0	0	49	1.00
361653--361695	20	2.1	22	87	12	65	55	0	0	44	0.99
361652--361695	18	2.3	20	92	7	74	54	0	0	45	0.99
361640--361740	49	2.0	51	81	11	120	48	0	1	49	1.12
361778--361835	24	2.4	24	81	16	75	43	8	20	27	1.81
362279--362315	5	7.2	5	90	6	56	0	72	0	27	0.84
362811--362858	21	2.3	21	96	0	87	41	12	18	27	1.86
367463--367510	21	2.3	21	96	0	87	41	12	18	27	1.86
369211--369346	60	2.3	60	79	5	150	33	16	5	44	1.70
369577--369680	55	1.9	55	82	7	131	45	4	19	30	1.71
371979--372374	7	53.1	7	71	22	219	40	1	4	52	1.32
371974--372355	12	31.4	12	74	15	263	41	1	4	52	1.32
371986--372374	5	76.6	5	69	23	176	40	1	4	52	1.31
372102--372376	26	10.1	26	72	19	113	39	1	4	54	1.29
371979--372399	137	3.1	134	76	12	358	40	1	4	53	1.31
384582--384631	24	2.1	24	85	7	66	28	2	12	58	1.45
390188--390237	24	2.1	24	85	7	66	28	2	12	58	1.45
392517--392780	3	73.2	4	68	25	80	39	1	4	54	1.30
392522--392792	7	38.1	7	71	23	137	38	1	4	55	1.30
392517--392774	12	21.1	12	69	18	95	39	1	4	54	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392517--392788	22	13.0	21	72	21	150	38	1	4	54	1.31
392534--392594	19	3.1	19	76	17	52	37	0	9	52	1.35
392516--392787	17	16.3	17	70	18	130	38	1	4	54	1.31
396793--396830	16	2.4	16	100	0	76	10	18	34	36	1.85
401046--401087	14	3.0	14	100	0	84	35	0	28	35	1.58
401337--402627	644	2.0	646	98	0	2489	31	14	14	38	1.87
407495--407553	29	2.0	29	93	0	100	23	15	15	45	1.84
408745--408814	34	2.0	35	97	2	133	48	14	17	20	1.81
416213--416257	20	2.3	19	85	7	63	80	4	0	15	0.87
426241--426474	79	3.0	79	85	2	301	29	23	9	37	1.87
433172--433404	78	3.0	79	87	2	326	29	22	11	36	1.89
456681--457169	247	2.0	241	95	4	883	32	21	11	35	1.88
468321--468399	38	2.1	38	95	0	140	22	16	18	41	1.90
470041--470084	21	2.1	21	86	0	61	20	11	20	47	1.80
482179--482209	9	3.6	9	91	8	55	9	0	0	90	0.46
482174--482216	8	5.4	8	89	8	61	9	2	0	88	0.60
482174--482209	17	2.2	17	95	5	65	11	0	0	88	0.50
485675--485705	2	15.5	2	100	0	62	51	0	0	48	1.00
492916--492977	27	2.2	28	88	2	90	46	33	6	12	1.68
494870--495084	54	4.0	54	75	1	171	23	20	19	36	1.95
497733--497776	23	1.9	23	90	0	70	38	9	18	34	1.82
497698--498092	87	4.5	87	90	1	569	44	10	12	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497900--497950	23	2.2	23	92	0	84	37	7	21	33	1.82
497987--498034	23	2.1	23	88	0	69	45	8	10	35	1.68
498625--498680	24	2.4	23	80	16	71	53	5	0	41	1.24
498682--499122	199	2.2	198	88	3	645	29	15	14	40	1.87
499227--499308	30	2.7	30	80	12	80	47	1	1	50	1.16
500417--500471	2	27.5	2	100	0	110	49	0	0	50	1.00
502369--502398	15	2.0	15	93	0	51	43	20	10	26	1.83
507839--507874	18	2.1	17	94	5	63	41	8	11	38	1.71
511060--511502	5	86.6	5	66	23	146	53	4	1	40	1.32
511057--511504	7	61.4	7	69	24	188	53	4	1	40	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11