genome.fa.s8259.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008259.1 Hibiscus syriacus cultivar Beakdansim tig00110912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2373650

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1275 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1647491--1647527	18	2.1	18	89	0	56	18	29	10	40	1.85
1648991--1649773	200	3.9	200	95	0	1358	31	17	15	36	1.91
1650001--1650050	19	2.6	19	96	0	91	54	10	2	34	1.45
1651596--1651683	33	2.7	33	89	3	133	3	43	0	53	1.17
1651870--1651935	33	2.0	33	90	0	105	24	45	0	30	1.53
1651969--1652033	21	3.1	21	95	0	112	15	30	9	44	1.78
1654245--1654716	182	2.6	182	91	0	750	26	16	13	42	1.86
1654866--1654892	11	2.5	11	100	0	54	37	22	7	33	1.82
1657406--1657434	2	14.5	2	100	0	58	48	0	51	0	1.00
1660462--1660509	23	2.1	23	84	0	60	27	4	10	58	1.49
1661181--1661227	19	2.5	19	96	0	85	29	10	10	48	1.71
1667053--1667109	27	2.1	27	83	6	71	24	22	21	31	1.98
1667975--1668011	18	2.1	18	94	0	65	27	16	0	56	1.40
1674555--1674608	27	2.0	26	85	3	72	24	16	29	29	1.97
1675484--1675518	18	1.9	18	94	0	61	25	17	0	57	1.40
1677242--1677266	12	2.1	12	100	0	50	24	0	0	76	0.80
1678405--1678431	2	13.5	2	100	0	54	51	0	0	48	1.00
1682008--1682033	4	6.5	4	100	0	52	0	23	0	76	0.78
1682933--1682978	19	2.5	19	82	10	60	71	0	4	23	1.03
1682991--1683033	18	2.4	18	92	0	68	72	0	6	20	1.08
1684767--1684808	19	2.2	19	83	8	50	23	7	19	50	1.72
1685949--1685986	19	2.0	20	94	5	69	73	2	0	23	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1686003--1686063	5	11.8	5	79	10	61	80	1	3	14	0.92
1686001--1686072	6	12.3	6	77	11	62	79	2	2	15	0.97
1686001--1686081	31	2.5	31	92	4	126	76	2	4	16	1.06
1691723--1691761	18	2.2	18	90	0	60	71	0	7	20	1.10
1702590--1702648	19	3.1	19	85	4	75	13	27	37	22	1.91
1702614--1702656	19	2.3	19	84	4	52	18	32	23	25	1.97
1705958--1706014	20	2.8	20	83	0	78	15	26	36	21	1.93
1716621--1716664	13	3.4	13	80	0	61	36	31	18	13	1.90
1716621--1716669	26	1.9	25	95	4	89	34	32	20	12	1.90
1716585--1716657	31	2.3	31	85	2	92	35	28	19	16	1.93
1717109--1717171	33	1.9	33	93	6	110	28	12	14	44	1.82
1717648--1717714	33	2.0	33	97	0	125	13	29	17	38	1.88
1718494--1718554	14	4.4	14	76	12	54	19	1	29	49	1.58
1718501--1718555	7	8.0	7	81	4	58	18	1	32	47	1.59
1718705--1718759	25	2.2	26	83	9	69	47	3	5	43	1.44
1723471--1723525	6	9.0	6	76	11	58	16	1	3	78	0.98
1729173--1729206	3	11.3	3	93	0	59	32	2	0	64	1.08
1734369--1734434	31	2.1	31	91	0	105	34	7	16	40	1.77
1734461--1734513	22	2.4	22	96	0	97	43	13	13	30	1.82
1738245--1738290	19	2.4	19	92	0	74	43	2	8	45	1.47
1738889--1738966	2	39.5	2	97	2	149	51	0	0	48	1.00
1742667--1742751	40	2.2	39	81	10	102	5	12	5	75	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1757332--1757440	55	2.0	54	91	5	175	37	4	10	47	1.58
1757673--1757739	33	2.0	33	91	0	107	41	5	8	43	1.60
1784868--1784976	55	2.0	55	89	5	168	38	3	10	47	1.55
1785208--1785274	33	2.0	33	94	0	116	43	5	8	41	1.60
1788304--1788356	16	3.4	16	70	15	56	45	3	13	37	1.61
1795948--1797326	689	2.0	689	92	1	2284	35	18	15	30	1.92
1798284--1798325	21	2.0	21	90	0	66	19	23	38	19	1.93
1798584--1798623	20	2.0	20	90	4	64	55	7	0	37	1.29
1799757--1799810	19	2.8	20	75	8	58	29	11	3	55	1.52
1801089--1801130	21	2.0	21	86	9	59	19	21	38	21	1.94
1801388--1801427	20	2.0	20	90	4	64	55	7	0	37	1.29
1803954--1804104	74	2.0	74	98	0	293	37	11	8	42	1.73
1803974--1804091	37	3.2	37	63	29	88	39	11	7	40	1.70
1809036--1811195	791	2.8	786	89	2	3320	34	19	18	27	1.96
1811306--1811511	81	2.5	81	82	3	243	35	13	16	34	1.88
1811957--1812059	41	2.5	41	83	3	134	31	13	18	36	1.90
1811940--1812083	43	3.5	42	76	10	143	27	13	19	39	1.89
1812143--1812241	41	2.4	40	86	5	144	30	15	15	39	1.88
1812155--1812242	41	2.1	42	93	2	151	31	14	12	40	1.84
1820885--1820918	17	2.1	16	88	5	50	14	8	0	76	1.01
1831122--1831155	17	2.1	16	88	5	50	14	8	0	76	1.01
1832173--1832279	50	2.3	47	81	15	125	53	13	1	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1832480--1832605	50	2.5	50	97	0	234	23	15	25	35	1.94
1835993--1836113	59	2.1	59	90	0	188	35	23	17	23	1.95
1841162--1841191	15	2.0	15	100	0	60	46	6	33	13	1.69
1843575--1843787	109	1.9	110	95	0	383	35	17	18	28	1.93
1846537--1846616	40	2.0	40	82	0	97	25	26	27	21	1.99
1846845--1846889	20	2.2	20	92	7	74	26	8	15	48	1.74
1848192--1848244	15	3.6	15	80	7	56	30	5	22	41	1.77
1848466--1848512	24	2.0	24	86	0	67	21	21	23	34	1.97
1850065--1850135	37	1.9	37	97	0	133	40	15	11	32	1.83
1850811--1850860	3	17.3	3	75	8	50	28	4	2	66	1.21
1850949--1851035	21	4.2	20	70	18	63	18	6	2	72	1.18
1855354--1855387	15	2.3	15	89	0	50	35	0	20	44	1.52
1855556--1855704	24	6.3	24	77	12	107	22	24	24	29	1.99
1855556--1855624	23	2.9	23	79	12	77	24	26	23	26	2.00
1855573--1855706	24	5.7	24	80	7	118	23	23	23	29	1.99
1857154--1857192	19	2.1	19	90	0	60	25	5	25	43	1.75
1866300--1866427	53	2.4	53	92	5	222	28	7	28	34	1.85
1866875--1867070	82	2.4	79	83	4	232	32	19	14	33	1.92
1869430--1869465	18	2.1	17	89	5	54	27	19	2	50	1.62
1873600--1874047	45	9.9	45	82	3	481	25	17	11	44	1.83
1873599--1874047	135	3.3	135	87	1	587	25	17	11	44	1.83
1876965--1877025	27	2.3	27	81	10	72	42	0	3	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1881588--1881902	45	7.0	45	88	3	420	24	19	13	42	1.87
1881747--1881825	26	3.3	26	61	29	66	20	18	13	46	1.83
1885846--1885887	16	2.5	17	92	3	68	30	38	0	30	1.58
1889946--1889995	25	2.0	24	88	3	73	26	6	2	66	1.26
1890444--1890580	41	3.4	42	80	8	151	37	18	23	20	1.94
1891626--1891690	26	2.5	26	77	7	69	30	15	10	43	1.81
1895679--1895745	21	3.2	21	80	0	71	29	28	26	14	1.96
1896312--1896356	21	2.1	21	91	0	72	48	13	15	22	1.79
1896983--1897023	6	6.8	6	91	0	55	46	17	0	36	1.48
1897922--1898859	169	5.5	168	78	5	917	32	19	17	29	1.95
1897922--1898807	339	2.6	335	80	5	991	33	20	17	29	1.95
1901212--1901319	54	2.0	54	94	0	189	37	12	16	34	1.86
1901792--1901925	25	5.3	25	76	17	100	23	11	9	55	1.65
1901783--1901905	52	2.5	50	82	5	160	26	9	9	54	1.64
1902271--1902347	25	3.1	25	86	0	100	49	24	1	24	1.58
1903803--1903840	2	19.0	2	100	0	76	50	0	0	50	1.00
1904399--1904442	23	2.0	22	82	13	54	25	22	13	38	1.91
1904723--1904768	19	2.3	19	85	7	56	54	0	2	43	1.12
1904729--1904782	19	2.8	18	76	23	56	51	0	1	46	1.11
1904736--1904778	18	2.3	18	88	8	59	46	0	2	51	1.13
1911686--1911727	3	13.3	3	85	9	57	38	0	0	61	0.96
1911682--1911727	20	2.5	20	86	10	62	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1911742--1911830	6	14.8	6	97	0	142	21	16	11	50	1.76
1913863--1913893	16	1.9	16	100	0	62	22	0	6	70	1.09
1918313--1918351	18	2.2	18	100	0	78	38	20	10	30	1.86
1920276--1921417	242	4.8	242	83	6	1359	32	16	15	35	1.90
1920282--1921417	477	2.4	472	82	4	1367	32	16	14	35	1.89
1921610--1922030	131	3.2	130	78	8	352	31	20	15	31	1.94
1922223--1922270	24	1.9	25	84	16	64	18	0	2	79	0.84
1927344--1927553	29	7.4	28	79	10	171	50	10	5	33	1.60
1927344--1927553	112	1.9	112	83	8	275	50	10	5	33	1.60
1927957--1928027	35	2.0	35	91	0	115	47	5	14	32	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11