genome.fa.s8303.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008303.1 Hibiscus syriacus cultivar Beakdansim tig00110989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1196166

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342946--342986	21	2.0	21	90	0	64	34	36	14	14	1.87
343104--343201	42	2.3	42	87	0	142	18	20	32	28	1.96
344676--344746	20	3.5	20	86	0	106	52	16	16	14	1.76
349949--350054	25	4.3	25	73	11	67	30	6	0	62	1.27
363252--363326	7	10.6	7	98	1	141	57	0	41	1	1.07
371548--371585	20	1.9	20	94	0	67	47	2	0	50	1.15
376113--376145	16	2.1	16	88	11	50	45	9	12	33	1.73
378477--378521	14	3.4	14	73	20	51	28	0	44	26	1.55
391460--391675	98	2.2	99	82	8	255	36	12	13	37	1.83
395089--395452	183	2.0	181	98	1	710	27	34	1	36	1.67
398884--398915	2	16.0	2	100	0	64	0	50	0	50	1.00
400831--402266	329	4.4	329	88	2	2017	25	19	23	31	1.98
400831--402268	494	2.9	491	83	3	1737	25	19	23	31	1.98
400831--402268	165	8.7	165	84	3	1702	25	19	23	31	1.98
402905--402932	14	2.0	14	100	0	56	50	7	28	14	1.69
405509--405686	90	2.0	90	90	0	284	37	10	6	45	1.64
405648--405717	22	3.3	21	70	16	63	50	2	4	42	1.37
412364--412537	90	2.0	88	90	2	276	36	10	6	45	1.66
415885--415931	18	2.7	18	80	3	60	36	8	27	27	1.86
416291--416901	257	2.4	254	89	7	912	40	19	12	27	1.88
422634--422663	14	2.1	15	93	6	53	36	0	0	63	0.95
426085--426147	25	2.4	27	76	15	69	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426534--426589	10	5.4	10	76	16	51	42	10	3	42	1.56
426734--426806	31	2.4	30	88	2	101	43	15	4	36	1.65
426800--426827	12	2.3	12	100	0	56	42	7	7	42	1.59
426423--426856	229	1.9	224	93	4	755	37	10	8	43	1.69
437191--437232	17	2.5	17	84	0	57	21	14	4	59	1.53
439320--439397	40	2.0	40	89	0	120	30	12	23	33	1.92
441093--441348	84	3.1	82	72	15	229	33	14	16	35	1.89
449591--449763	21	8.4	21	75	10	115	42	20	32	4	1.71
449667--449761	42	2.3	42	87	1	129	44	20	32	3	1.67
450198--450440	43	5.7	43	90	0	333	30	21	19	27	1.98
450198--450481	43	6.6	43	87	0	307	30	22	18	29	1.97
451097--451140	21	2.1	21	87	8	63	38	11	4	45	1.61
454438--454568	42	3.2	40	88	3	174	43	0	1	54	1.15
454438--454573	40	3.3	41	88	2	166	43	0	1	54	1.14
456860--457018	79	2.0	79	85	6	216	41	8	9	40	1.67
458173--458220	3	15.3	3	82	8	60	31	0	0	68	0.90
458173--458215	13	3.4	13	84	15	63	30	0	0	69	0.88
458173--458214	22	1.9	22	100	0	84	28	0	0	71	0.86
458182--458221	19	2.1	19	90	0	62	30	0	0	70	0.88
458171--458232	22	2.9	22	83	7	83	32	0	0	67	0.91
459341--459371	10	3.0	10	95	4	53	22	0	0	77	0.77
462795--462836	22	2.0	21	85	4	57	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464086--464451	183	2.0	183	97	0	687	44	13	16	25	1.84
468491--468518	2	14.0	2	100	0	56	50	0	50	0	1.00
470153--470195	18	2.5	17	85	7	61	67	2	4	25	1.22
470583--470685	34	2.9	35	89	5	154	29	13	12	44	1.81
471217--471974	105	7.3	105	87	5	1006	22	17	26	33	1.96
471217--471974	313	2.4	310	87	5	1089	22	17	26	33	1.96
472633--472773	35	4.0	36	89	2	223	37	14	21	26	1.92
472633--472770	71	1.9	71	91	2	224	36	14	21	27	1.93
473246--473281	18	2.0	18	88	0	54	41	30	8	19	1.81
473677--473727	22	2.3	22	96	0	93	25	11	27	35	1.91
474334--474443	45	2.5	42	79	16	107	1	13	8	76	1.09
474364--474445	17	4.9	16	74	15	60	1	13	7	78	1.02
474397--474421	10	2.5	10	100	0	50	0	8	8	84	0.79
474407--474449	16	2.7	15	82	10	50	0	13	4	81	0.84
474364--474446	7	11.3	7	72	19	53	1	13	7	78	1.01
474390--474449	9	6.7	9	74	12	52	0	15	5	80	0.88
475543--475581	8	5.0	8	84	6	53	58	12	17	10	1.61
475543--475581	15	2.5	15	87	4	51	58	12	17	10	1.61
478127--478164	2	19.0	2	94	0	67	52	0	0	47	1.00
478667--478709	18	2.5	17	85	7	61	67	2	4	25	1.22
479213--479276	31	2.1	30	88	2	92	51	12	9	26	1.70
480078--480102	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480229--480291	16	3.9	16	75	23	53	50	1	4	42	1.32
480911--480978	32	2.1	32	86	0	91	29	32	1	36	1.67
485322--485386	5	12.4	5	75	12	51	13	3	7	75	1.14
485322--485386	22	3.4	19	75	19	55	13	3	7	75	1.14
485813--487376	779	2.0	778	97	0	2950	31	17	16	34	1.92
487628--487652	11	2.3	11	100	0	50	24	12	8	56	1.62
489161--489197	19	1.9	19	94	0	65	32	29	16	21	1.95
489223--489316	20	4.6	19	75	10	62	26	20	22	30	1.98
489304--489389	40	2.1	39	85	10	111	27	29	19	23	1.98
489325--489389	20	3.2	20	97	0	121	26	29	20	24	1.99
489552--489631	22	3.6	22	89	0	124	20	43	17	18	1.88
489897--489921	12	2.1	12	100	0	50	0	8	16	76	1.02
490031--490118	20	4.4	20	84	1	88	18	19	22	39	1.92
490085--490128	20	2.2	20	91	0	70	11	13	20	54	1.69
491840--491887	18	2.7	18	93	0	69	27	20	8	43	1.80
492142--492278	20	7.4	20	66	18	82	37	22	21	18	1.94
492147--492281	54	2.5	54	95	0	243	35	21	21	21	1.96
492285--492364	33	2.4	34	89	2	126	15	20	25	40	1.90
492296--492375	20	4.3	20	70	20	66	18	18	21	41	1.91
492371--492414	20	2.2	20	95	0	79	13	11	20	54	1.69
492895--492999	21	5.0	21	77	0	111	20	36	19	24	1.95
492891--493000	42	2.6	42	77	8	125	19	37	19	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
494374--494439	30	2.2	30	100	0	132	28	3	13	54	1.54
494589--494946	20	18.9	20	78	10	313	22	19	21	35	1.96
494609--494790	93	1.9	94	86	1	258	22	18	22	36	1.95
494577--494918	54	6.1	54	79	8	335	21	19	21	36	1.95
494722--494943	74	3.0	74	74	9	227	21	19	22	36	1.95
495121--495155	18	1.9	18	94	0	61	17	2	25	54	1.57
497193--497229	14	2.6	14	91	4	56	5	21	21	51	1.68
497422--497473	24	2.2	23	86	6	77	42	17	19	21	1.89
498293--498335	22	2.0	22	95	0	77	25	18	23	32	1.97
498328--498464	21	6.6	21	80	9	165	20	22	25	31	1.98
498314--498402	41	2.2	41	95	0	160	22	21	24	31	1.98
498328--498464	62	2.2	62	94	0	247	20	22	25	31	1.98
498328--498497	62	2.7	62	87	5	202	22	22	22	32	1.98
498559--498605	19	2.4	19	82	3	58	25	14	29	29	1.95
498571--498607	19	1.9	19	94	0	65	21	16	29	32	1.95
506938--506991	23	2.3	24	96	3	101	42	0	9	48	1.35
509223--509264	15	2.8	15	96	0	75	52	0	9	38	1.34
509474--509525	24	2.2	24	86	6	70	5	3	50	40	1.45
509465--509525	18	3.4	17	76	14	52	6	4	47	40	1.51
510217--510289	6	12.3	6	73	23	66	49	1	0	49	1.09
510212--510283	23	3.2	21	77	16	65	50	1	0	48	1.09
510236--510311	35	2.1	36	90	2	118	48	1	0	50	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510227--510298	35	2.0	36	84	10	94	50	2	0	47	1.15
510237--510362	50	2.5	49	73	14	114	46	1	3	48	1.27
510315--510565	117	2.1	117	100	0	502	44	5	7	42	1.57
510396--510525	45	3.0	44	77	10	124	44	6	7	41	1.58
510549--510624	36	2.1	36	90	0	116	47	9	1	42	1.44
510606--510656	15	3.3	15	71	15	50	50	3	3	41	1.39
510753--510854	20	5.2	19	68	28	63	42	5	6	45	1.55
510755--510816	22	2.9	21	79	13	72	45	3	8	43	1.49
510743--510880	57	2.4	55	81	9	170	40	6	8	44	1.61
510755--510818	24	2.9	22	79	9	69	45	3	7	43	1.48

Tables:   1   2   3   4   5   6   7