genome.fa.s8303.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008303.1 Hibiscus syriacus cultivar Beakdansim tig00110989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1196166

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510787--510848	20	3.0	20	81	13	65	38	4	6	50	1.50
510829--510911	37	2.3	36	87	6	114	39	10	7	42	1.68
511135--511204	2	35.0	2	100	0	140	50	0	0	50	1.00
511345--511373	9	3.2	9	100	0	58	34	10	0	55	1.34
511372--512069	4	174.5	4	100	0	1396	50	24	0	25	1.50
512092--512174	37	2.3	36	87	6	114	39	10	7	42	1.68
512365--512577	2	106.5	2	100	0	426	50	49	0	0	1.00
513360--513397	20	1.9	20	100	0	76	10	31	31	26	1.90
514042--514076	15	2.3	15	95	0	61	17	22	31	28	1.96
521654--521679	8	3.2	8	100	0	52	38	23	11	26	1.89
521727--521865	13	9.1	14	71	25	81	43	2	6	47	1.44
521762--521865	13	8.1	13	73	14	90	43	1	6	48	1.40
521728--521834	28	3.5	30	81	12	121	43	3	6	45	1.47
521800--521848	18	2.8	17	90	6	71	42	0	8	48	1.32
522018--522171	2	78.5	2	67	15	63	46	5	1	46	1.35
522061--522093	7	5.0	7	89	10	52	42	0	0	57	0.98
521990--522175	23	8.2	22	69	12	76	44	5	2	47	1.37
523180--523233	25	2.2	25	77	9	58	64	1	5	27	1.26
525470--525663	65	3.0	64	80	6	214	27	15	24	31	1.96
525584--525630	19	2.5	19	83	10	62	25	17	31	25	1.97
525850--525889	20	2.0	21	85	14	57	45	7	5	42	1.54
526023--526053	15	2.1	15	100	0	62	32	41	0	25	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526025--526059	15	2.3	15	90	0	52	34	34	0	31	1.58
533034--533197	65	2.5	64	84	1	220	28	15	25	30	1.96
533415--533454	20	2.0	21	90	5	64	45	7	2	45	1.45
533752--533794	20	2.2	20	87	8	61	30	11	20	37	1.89
535123--535181	18	3.2	18	77	13	59	37	32	0	30	1.58
537060--537117	26	2.3	23	80	13	62	46	0	3	50	1.18
537645--537687	20	2.2	20	91	0	68	34	20	11	32	1.89
538465--538672	99	2.1	98	84	4	278	42	17	12	28	1.85
539824--539883	29	2.0	31	90	6	97	36	6	15	41	1.73
539948--540008	19	3.2	19	88	0	86	37	9	13	39	1.77
542545--543003	46	10.0	46	93	0	742	38	5	22	34	1.76
543191--543298	54	2.0	54	96	0	198	38	6	10	44	1.64
543611--543664	21	2.6	21	74	11	56	40	9	16	33	1.80
544186--544231	16	2.9	16	78	12	51	39	2	0	58	1.10
549466--549589	8	14.5	8	69	17	54	76	4	16	1	1.04
549491--549594	12	8.5	11	71	17	64	77	4	17	0	0.93
549466--549579	50	2.3	50	77	13	119	76	5	16	1	1.05
549548--549594	6	8.0	6	82	17	55	82	0	17	0	0.66
549493--549584	19	4.5	19	71	25	64	77	5	17	0	0.96
549504--549594	27	3.1	28	72	13	69	76	4	18	0	0.94
549913--549943	12	2.6	12	100	0	62	38	12	19	29	1.89
549937--550255	43	7.2	43	80	12	306	26	12	28	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549980--550313	97	3.6	95	76	13	343	27	12	27	31	1.93
549931--550203	140	2.0	140	91	1	440	28	12	27	31	1.93
549937--550301	183	2.0	183	88	3	547	27	12	28	31	1.93
552568--552614	23	2.0	23	95	0	85	38	2	8	51	1.45
553895--553956	31	2.2	28	78	16	65	30	27	22	19	1.98
557668--557702	15	2.4	14	86	9	52	42	2	0	54	1.15
557716--557760	23	2.0	22	91	4	72	46	0	0	53	1.00
557708--557781	31	2.3	32	86	4	96	45	0	0	54	1.00
560540--560608	30	2.3	30	97	0	129	28	26	17	27	1.97
560765--560998	51	4.6	51	86	2	310	47	16	11	25	1.80
560765--560997	101	2.3	102	89	1	351	46	16	11	25	1.80
561699--561774	30	2.5	30	95	0	134	23	7	17	51	1.71
561719--561805	30	3.0	28	83	3	84	33	6	13	45	1.70
562762--562801	21	1.9	21	89	0	62	20	22	17	40	1.92
564436--564484	21	2.3	22	75	6	57	28	26	0	44	1.54
570775--570813	20	2.0	20	85	10	53	43	17	2	35	1.63
573361--573489	29	4.4	29	79	0	132	41	17	20	21	1.91
573361--573489	58	2.2	58	88	0	186	41	17	20	21	1.91
575992--576018	2	13.5	2	100	0	54	48	0	0	51	1.00
576179--576210	15	2.1	15	94	0	55	12	9	0	78	0.97
576180--576233	21	2.6	20	80	13	56	14	5	5	74	1.19
576206--576281	31	2.4	32	79	12	86	19	2	6	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586638--586840	7	28.9	7	97	0	343	86	1	0	11	0.69
586639--586833	1	195.0	1	74	0	165	87	2	0	10	0.63
587938--588144	110	1.9	110	87	0	306	37	23	18	21	1.94
589193--589330	70	2.0	70	98	0	267	44	12	18	24	1.84
589571--589663	20	4.7	20	93	0	159	20	19	20	39	1.92
589891--589940	2	25.0	2	95	0	91	48	0	2	50	1.12
589999--590036	2	19.0	2	100	0	76	50	0	0	50	1.00
591303--591505	29	7.0	29	85	4	223	37	17	21	24	1.94
591280--591505	87	2.6	87	80	4	224	38	17	20	23	1.93
593243--593274	6	5.2	6	96	3	55	46	18	3	31	1.65
593795--593844	3	16.7	3	100	0	100	66	0	0	34	0.92
594624--594674	3	16.3	3	84	8	66	35	3	0	60	1.15
594624--594674	19	2.7	19	87	3	77	35	3	0	60	1.15
613978--614010	17	2.0	17	94	5	59	3	12	24	60	1.46
613977--614031	17	3.0	17	80	20	58	9	10	23	56	1.62
614242--614299	21	2.8	21	89	0	80	46	5	43	5	1.48
614899--614985	44	2.0	44	86	4	122	33	19	16	31	1.94
629673--629746	21	3.6	21	70	3	69	21	18	22	36	1.95
629669--629778	41	2.7	41	90	1	177	21	20	20	37	1.95
629910--629975	19	3.3	19	76	12	78	18	19	19	42	1.90
630051--630095	6	7.5	6	100	0	90	33	51	15	0	1.44
630374--630445	22	3.4	21	77	11	85	38	23	18	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630437--630526	20	4.8	20	80	15	120	42	22	23	12	1.87
630455--630535	34	2.5	33	88	6	128	43	23	22	11	1.85
637565--637676	19	5.8	19	77	7	93	28	12	21	37	1.90
637682--637988	40	7.7	40	69	15	161	35	14	22	28	1.92
637701--637991	80	3.6	79	87	2	384	37	14	20	28	1.92
637669--637991	160	2.0	160	84	1	423	35	14	21	28	1.92
645181--645222	19	2.2	19	87	8	59	50	2	16	30	1.58
651459--651529	35	2.0	36	94	5	128	56	19	11	12	1.66
652180--652226	22	2.1	23	88	4	69	38	25	12	23	1.90
660626--660682	29	1.9	30	89	7	89	40	5	5	49	1.48
660633--660698	29	2.3	29	82	12	75	40	7	7	43	1.61
661701--661732	15	2.1	16	94	5	57	53	0	6	40	1.26
662814--663062	42	5.9	42	77	10	222	52	5	17	24	1.66
662814--663143	127	2.6	127	78	8	312	53	5	16	24	1.63
662793--663057	85	3.1	85	78	8	261	52	6	17	23	1.66
666098--666153	29	2.0	29	82	10	71	51	10	8	28	1.66
666138--666188	22	2.3	22	86	0	75	54	7	7	29	1.57
671094--671235	58	2.4	59	82	5	162	31	23	5	38	1.78
671728--671753	5	5.2	5	100	0	52	80	0	19	0	0.71
677033--677229	97	2.0	96	86	2	270	32	15	14	37	1.88
680053--680264	104	2.0	105	99	0	417	33	6	8	52	1.57
681927--681990	33	1.9	34	84	6	87	50	4	3	42	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
685084--685140	21	2.7	21	80	0	78	29	38	10	21	1.87
686796--686876	42	1.9	42	80	14	96	40	2	17	39	1.63
692003--692199	55	3.6	55	86	2	272	32	17	21	28	1.96
692549--692592	21	2.1	21	83	8	54	40	13	18	27	1.88
692731--692787	21	2.7	22	78	13	66	24	14	24	36	1.92
692773--692817	23	2.0	23	95	0	81	20	28	24	26	1.99
692777--692832	23	2.5	23	85	8	71	17	28	25	28	1.98
696699--696736	20	1.9	20	100	0	76	13	7	36	42	1.73
698958--699092	55	2.5	55	87	0	198	36	15	20	27	1.93
699678--699718	21	2.0	21	85	0	55	26	17	26	29	1.97

Tables:   1   2   3   4   5   6   7