genome.fa.s8303.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008303.1 Hibiscus syriacus cultivar Beakdansim tig00110989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1196166

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1096077--1096130	24	2.4	22	73	11	54	33	0	3	62	1.12
1096145--1096229	42	2.0	43	84	11	111	30	2	0	67	1.04
1096106--1096231	44	2.9	43	76	14	123	31	2	0	65	1.11
1096112--1096254	16	8.8	16	67	15	62	28	2	1	67	1.10
1096193--1096262	24	2.9	23	78	16	72	20	4	1	74	1.07
1096250--1096275	9	2.9	9	100	0	52	0	19	0	80	0.71
1096159--1096293	49	2.7	51	77	13	129	20	5	0	73	1.07
1100574--1100693	32	3.7	31	85	4	141	28	14	21	35	1.92
1101271--1101593	106	3.0	106	85	0	423	33	23	19	23	1.97
1101962--1102048	37	2.4	37	84	1	104	25	20	14	39	1.91
1101851--1102029	87	2.1	87	94	0	313	32	19	12	35	1.89
1101938--1102177	102	2.4	102	88	0	354	32	18	11	37	1.86
1102215--1102317	36	2.8	37	92	2	181	29	22	12	35	1.91
1102223--1102409	101	1.8	102	89	3	297	27	21	12	38	1.89
1102327--1102409	36	2.3	36	87	6	125	25	21	13	39	1.90
1102493--1102650	84	1.9	85	86	1	228	31	24	19	25	1.98
1103597--1103704	22	4.6	22	68	26	71	34	1	1	62	1.17
1103602--1103747	34	4.3	34	75	18	119	32	2	0	64	1.10
1103710--1103755	23	1.9	23	86	8	65	21	2	2	73	1.04
1103738--1103790	13	3.8	13	76	16	52	18	1	3	75	1.05
1108379--1108432	28	1.9	28	88	7	83	48	0	0	51	1.00
1108399--1108454	20	2.8	20	86	8	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1108414--1108454	21	2.0	20	90	4	64	48	0	0	51	1.00
1108592--1108679	27	3.3	25	75	12	77	50	1	1	47	1.16
1108657--1108781	53	2.4	51	76	18	123	48	0	0	49	1.12
1108719--1108753	18	1.9	18	88	0	52	40	0	2	57	1.14
1108717--1108796	32	2.5	32	80	12	92	48	0	1	50	1.08
1108744--1108813	23	3.1	23	76	13	65	50	0	0	50	1.00
1108680--1108796	30	3.7	31	73	16	107	49	0	0	48	1.12
1108751--1108807	21	2.5	23	80	8	64	50	0	0	49	1.00
1108700--1108861	53	3.1	54	79	15	146	48	0	1	49	1.16
1109413--1109457	2	22.5	2	100	0	90	51	0	0	48	1.00
1109457--1109481	2	12.5	2	100	0	50	52	0	48	0	1.00
1116164--1116238	31	2.4	31	86	0	105	37	13	24	25	1.91
1116488--1116542	23	2.3	24	81	12	69	50	0	5	43	1.25
1116553--1116588	18	1.9	19	88	5	56	61	0	5	33	1.19
1117177--1117218	3	14.0	3	100	0	84	66	0	0	33	0.92
1117249--1117311	29	2.2	29	88	0	90	36	25	3	34	1.72
1119046--1119131	32	2.8	31	87	7	122	26	45	16	11	1.81
1119049--1119139	29	3.0	30	88	4	130	27	43	16	12	1.83
1119566--1119649	26	3.3	26	91	1	125	47	8	35	8	1.64
1120136--1120182	16	3.0	16	84	9	53	29	0	10	59	1.31
1120157--1120187	15	2.1	14	94	5	53	38	0	6	54	1.26
1122399--1122436	14	2.7	14	92	8	60	52	15	0	31	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122413--1122514	21	5.0	21	67	17	56	50	8	0	41	1.34
1122462--1122534	24	3.0	25	76	17	73	49	10	0	39	1.38
1122413--1123042	60	10.1	60	72	17	400	46	11	1	41	1.49
1122622--1122661	14	2.9	14	78	14	55	40	10	0	50	1.36
1122721--1122768	14	3.6	14	78	16	57	50	14	0	35	1.44
1122720--1122826	25	4.6	22	72	21	67	50	11	0	38	1.38
1122838--1123042	21	10.2	21	66	18	78	45	11	0	42	1.40
1122789--1123373	120	5.1	120	76	17	614	45	12	1	41	1.51
1122317--1122971	325	2.0	321	91	3	1050	44	11	3	40	1.56
1122955--1123049	11	7.9	12	68	20	56	45	10	0	44	1.38
1122414--1123373	395	2.5	385	95	3	1680	45	11	1	40	1.52
1123116--1123163	14	3.6	14	78	16	57	50	14	0	35	1.44
1123115--1123163	25	2.0	25	91	0	80	48	14	0	36	1.44
1123115--1123173	25	2.6	22	84	10	66	50	11	0	37	1.39
1123115--1123184	21	3.1	22	80	12	63	51	10	0	38	1.36
1123132--1123373	60	4.3	54	87	7	226	47	12	0	40	1.41
1123233--1123320	21	4.3	21	67	18	60	45	13	0	40	1.44
1123184--1123373	60	3.2	60	95	0	337	45	13	0	40	1.44
1123375--1123406	10	3.2	10	90	0	55	56	9	9	25	1.61
1127072--1127133	28	2.1	30	94	5	110	56	12	0	30	1.37
1127553--1127596	23	1.9	23	100	0	88	27	27	22	22	1.99
1127611--1127662	26	2.0	26	100	0	104	19	19	38	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127708--1127777	32	2.2	33	89	2	106	11	12	45	30	1.78
1128216--1128254	20	2.1	18	85	9	51	41	5	5	48	1.47
1130638--1130709	23	3.2	22	75	9	65	23	15	25	36	1.94
1130702--1130755	24	2.2	24	86	0	72	20	22	27	29	1.98
1135632--1135661	11	2.7	11	100	0	60	16	50	20	13	1.78
1136359--1136402	21	2.0	21	86	4	61	38	27	18	15	1.91
1136369--1136423	21	2.5	23	88	5	78	30	27	25	16	1.96
1136369--1136432	23	2.9	23	83	4	78	31	25	26	17	1.97
1149058--1149114	21	3.0	18	83	14	78	29	12	8	49	1.70
1149341--1149404	20	3.2	20	90	0	74	34	14	21	29	1.93
1150576--1150630	22	2.3	24	82	17	62	47	7	5	40	1.54
1155962--1156006	18	2.5	18	100	0	90	64	0	0	35	0.94
1156529--1156561	15	2.1	16	94	5	59	30	0	0	69	0.88
1162169--1162228	3	20.0	3	83	6	77	65	1	0	33	1.03
1176133--1176169	18	2.1	18	89	0	56	29	8	16	45	1.76
1176500--1176567	33	2.1	33	88	5	102	57	5	1	35	1.32
1178581--1178611	16	1.9	16	100	0	62	58	22	12	6	1.58
1181437--1181479	21	2.0	21	81	4	50	32	11	2	53	1.50
1181495--1181533	18	2.2	18	100	0	78	33	17	5	43	1.72
1184624--1184672	23	2.1	23	85	7	64	30	0	2	67	1.02
1184625--1184677	10	4.9	10	78	15	52	28	0	3	67	1.07
1184641--1184665	13	1.9	13	100	0	50	28	0	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1184625--1184733	23	4.9	22	69	23	61	34	0	2	61	1.17
1184687--1184735	25	2.0	25	88	8	73	40	2	0	57	1.10
1189347--1189394	24	2.0	24	100	0	96	29	16	29	25	1.97
1190426--1190487	20	3.0	20	73	17	65	14	25	19	40	1.90
1195353--1195487	32	4.2	32	94	1	227	48	2	17	31	1.61

Tables:   1   2   3   4   5   6   7

The End!