genome.fa.s8303.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008303.1 Hibiscus syriacus cultivar Beakdansim tig00110989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1196166

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 813 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868209--868255	22	2.1	22	88	4	67	57	4	2	36	1.30
869547--869680	41	3.3	42	78	6	132	37	18	14	29	1.91
869396--869594	83	2.4	83	80	6	226	32	16	18	32	1.93
869396--869600	82	2.5	83	80	6	229	32	16	18	32	1.93
873386--873675	42	6.8	42	77	4	215	41	16	20	22	1.90
873460--873671	84	2.5	84	83	3	237	41	14	21	23	1.90
877991--878029	2	19.5	2	100	0	78	48	0	0	51	1.00
884349--884407	21	2.8	21	81	0	73	37	27	11	23	1.90
884469--884514	21	2.2	21	88	0	65	39	17	15	28	1.90
888475--888640	39	4.3	38	88	0	215	31	24	25	18	1.97
888476--888640	77	2.1	77	86	2	233	32	24	25	18	1.97
889570--889608	17	2.3	17	95	0	69	58	15	10	15	1.62
895662--895729	3	23.0	3	75	19	63	33	2	0	63	1.10
896509--896538	15	2.1	14	93	6	51	60	0	33	6	1.23
897032--897122	2	47.0	2	81	6	98	46	0	1	52	1.07
897440--897472	2	16.5	2	100	0	66	48	0	0	51	1.00
898883--898954	36	2.0	36	88	0	108	41	19	11	27	1.85
900180--900240	5	12.6	5	83	13	83	39	19	1	39	1.62
904429--904671	75	3.3	74	81	10	234	32	16	22	29	1.95
906317--906876	113	4.9	112	85	5	678	37	15	19	27	1.92
906317--906876	225	2.5	222	84	6	685	37	15	19	27	1.92
906687--906750	20	3.2	20	63	12	51	45	9	21	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907222--907291	3	24.0	3	80	16	85	34	1	0	64	1.03
907221--907291	32	2.2	32	87	5	108	33	1	0	64	1.02
908145--908175	15	2.0	16	93	6	55	58	0	35	6	1.24
908833--908857	2	12.5	2	100	0	50	48	0	0	52	1.00
909019--909082	2	32.0	2	100	0	128	50	0	0	50	1.00
909458--909485	3	9.3	3	100	0	56	35	0	0	64	0.94
911238--911281	2	22.5	2	86	4	63	45	2	0	52	1.13
912463--912511	24	2.1	24	84	3	64	24	18	26	30	1.98
918503--918567	23	2.8	24	80	4	87	21	24	24	29	1.99
918563--918637	23	3.3	23	98	0	141	16	28	22	33	1.95
918850--918879	14	2.1	14	100	0	60	43	0	20	36	1.52
928019--928066	18	2.7	18	90	0	69	22	25	20	31	1.98
928301--928351	25	2.0	25	100	0	102	11	49	19	19	1.79
928790--928861	32	2.2	32	85	0	90	15	27	30	26	1.96
931009--931123	21	5.4	21	75	12	90	33	27	11	27	1.91
930995--931122	44	3.0	42	83	8	152	31	27	13	28	1.94
930995--931062	23	3.1	22	73	21	70	30	26	14	27	1.95
931256--931302	21	2.2	21	92	0	76	29	21	10	38	1.87
931673--931716	20	2.2	20	87	0	61	38	25	9	27	1.86
931680--931719	20	2.0	20	95	0	71	35	27	10	27	1.89
937927--938000	37	2.0	37	100	0	148	51	21	8	18	1.72
938001--938051	26	2.0	26	100	0	102	21	23	19	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939177--939222	24	1.9	24	90	0	74	17	6	28	47	1.72
939178--939229	24	2.2	24	85	0	68	15	7	30	46	1.74
942677--942715	17	2.3	17	86	0	51	38	0	7	53	1.30
953408--953457	23	2.2	23	82	7	57	36	0	22	42	1.54
959687--959749	27	2.3	27	94	0	108	11	7	23	57	1.60
969569--969617	22	2.2	21	79	10	53	53	12	0	34	1.39
969588--970017	32	15.4	31	68	26	238	52	12	0	35	1.41
969571--969720	80	1.9	80	92	2	257	52	13	0	34	1.40
969558--970017	198	2.4	188	93	4	762	52	12	0	35	1.41
969588--969839	118	2.2	112	84	10	323	51	12	0	35	1.40
969766--969814	22	2.2	22	85	3	62	57	12	0	30	1.36
969651--969838	54	3.3	53	81	16	232	52	11	0	36	1.38
969734--969859	54	2.3	54	89	2	173	54	13	0	31	1.39
969700--969918	80	2.6	83	85	11	281	52	12	0	35	1.40
969849--970017	54	3.1	54	96	0	311	52	11	0	36	1.42
969898--969940	22	2.0	22	95	0	77	51	11	0	37	1.39
969900--969948	22	2.2	22	85	3	62	55	12	0	32	1.37
969571--969971	134	2.9	134	83	12	476	52	12	0	34	1.40
969952--969993	22	1.9	22	100	0	84	47	14	2	35	1.57
969954--970002	22	2.2	22	85	3	62	53	14	2	30	1.52
969997--970127	15	8.5	15	81	13	133	49	2	0	48	1.13
969997--970127	29	4.2	30	74	17	133	49	2	0	48	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970044--970149	43	2.4	43	84	4	133	47	1	0	50	1.12
976627--976705	41	1.9	42	89	2	124	34	6	30	29	1.82
977277--977306	15	2.0	15	100	0	60	33	0	20	46	1.51
978379--978484	37	2.8	38	83	11	135	44	10	13	32	1.77
986818--986871	24	2.2	24	90	0	81	18	12	9	59	1.60
988356--988415	27	2.3	27	91	2	95	41	0	5	53	1.23
988638--988696	25	2.2	25	80	17	66	33	5	1	59	1.29
990763--990796	16	2.1	17	88	5	52	55	0	0	44	0.99
992714--992760	18	2.6	18	96	0	85	31	0	4	63	1.13
993211--993270	27	2.2	28	82	8	70	30	0	5	65	1.14
993220--993270	26	2.0	27	84	7	70	29	0	5	64	1.17
997715--997814	27	3.8	25	76	23	100	78	2	1	19	0.91
997715--997810	33	2.9	34	83	13	119	78	2	1	18	0.92
997715--997810	5	18.2	5	80	17	90	78	2	1	18	0.92
999333--999363	3	10.3	3	100	0	62	32	0	0	67	0.91
1000858--1001018	30	5.3	30	78	8	139	18	15	8	57	1.63
1000852--1001004	60	2.5	60	81	4	157	17	15	7	59	1.58
1013898--1014296	56	7.1	56	90	1	593	36	18	20	25	1.95
1013898--1014494	168	3.6	167	82	10	723	37	17	19	25	1.94
1014258--1014336	40	2.0	40	92	0	131	37	13	20	27	1.91
1014202--1014379	96	1.9	96	91	2	295	38	14	19	27	1.90
1014296--1014494	56	3.6	56	88	0	281	39	15	19	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1014146--1014448	152	2.0	152	87	3	441	37	15	19	26	1.92
1014090--1014496	208	2.0	208	87	4	590	37	16	19	27	1.93
1017103--1017137	18	1.9	18	88	0	52	28	17	0	54	1.43
1028130--1028180	21	2.5	21	80	3	59	41	7	13	37	1.74
1029729--1029780	20	2.6	20	78	6	61	28	26	13	30	1.94
1037341--1037404	29	2.1	31	82	5	78	43	1	3	51	1.26
1037414--1037450	2	18.5	2	100	0	74	51	0	0	48	1.00
1041780--1041842	30	2.1	30	82	11	76	22	9	9	58	1.58
1045100--1045301	99	2.0	99	90	3	318	35	16	17	30	1.92
1046762--1047161	85	4.7	85	86	2	479	35	18	18	27	1.95
1049336--1049394	31	1.9	31	89	6	93	42	5	8	44	1.57
1049418--1049735	22	14.6	22	86	3	455	50	11	0	37	1.40
1049722--1049761	12	3.6	12	77	16	50	52	0	0	47	1.00
1049720--1049761	21	2.0	21	86	13	59	52	0	0	47	1.00
1050330--1050386	30	1.9	30	89	7	89	17	12	7	63	1.50
1050536--1050582	24	2.0	24	83	8	60	19	10	2	68	1.30
1052705--1052842	62	2.2	62	92	0	222	35	13	22	28	1.92
1053289--1053742	58	7.8	58	91	0	712	33	11	19	35	1.88
1059870--1059997	62	2.1	62	90	0	202	38	13	21	26	1.90
1060079--1060150	19	3.5	20	72	9	65	30	16	26	26	1.97
1060481--1060871	58	6.8	58	90	1	606	34	11	19	34	1.87
1060484--1060875	173	2.3	174	90	1	617	34	11	18	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061700--1061760	31	1.9	32	87	9	90	27	9	13	49	1.73
1064604--1064644	20	2.0	20	85	4	55	24	12	31	31	1.92
1068704--1068743	15	2.7	15	100	0	80	5	20	5	70	1.26
1070351--1070477	63	2.0	63	100	0	254	32	9	26	31	1.88
1073993--1074038	21	2.0	22	88	12	67	52	2	0	45	1.13
1075363--1075409	23	2.1	21	88	7	67	53	0	0	46	1.00
1075376--1075416	19	2.2	19	86	4	57	51	0	0	48	1.00
1079314--1079366	24	2.2	24	89	0	88	62	20	9	7	1.50
1080638--1080753	24	4.9	24	84	1	126	59	17	11	12	1.61
1086496--1086554	21	2.8	21	72	10	66	27	15	22	35	1.94

Tables:   1   2   3   4   5   6   7