genome.fa.s8338.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008338.1 Hibiscus syriacus cultivar Beakdansim tig00111059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2210178

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  10  of  12  ( 1386 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1615636--1615691	21	2.6	22	78	13	55	73	3	7	16	1.20
1617675--1617972	85	3.5	85	89	0	461	27	17	20	33	1.95
1618260--1618587	163	2.0	164	99	0	649	28	17	22	30	1.97
1619660--1619844	99	1.9	99	85	6	259	30	18	16	33	1.94
1620355--1620440	36	2.4	36	84	7	115	59	6	9	24	1.53
1623927--1623964	20	1.9	20	94	0	67	21	23	23	31	1.98
1627739--1627796	5	10.8	5	89	10	80	24	0	0	75	0.80
1632624--1632731	35	3.0	36	90	5	173	44	18	5	31	1.73
1632663--1632723	21	3.2	21	63	29	55	42	19	4	32	1.73
1635929--1635970	21	2.0	22	90	4	68	28	28	21	21	1.99
1643415--1643557	65	2.2	64	82	3	171	36	26	14	22	1.93
1644336--1644387	20	2.6	19	79	11	52	19	26	17	36	1.94
1649670--1649714	22	2.0	22	86	4	63	66	11	2	20	1.33
1650839--1650872	16	2.1	17	88	5	52	41	17	2	38	1.65
1651956--1652003	25	2.0	24	83	4	60	50	12	2	35	1.52
1661380--1661433	18	2.9	18	84	13	58	22	9	1	66	1.30
1666935--1666976	6	6.7	6	86	8	57	14	2	2	80	0.90
1667881--1667954	33	2.2	33	82	2	85	66	6	18	8	1.40
1668204--1668248	20	2.2	20	100	0	90	22	20	20	37	1.94
1670573--1670628	17	3.4	17	75	2	60	16	10	7	66	1.44
1686586--1686630	20	2.2	20	84	11	56	57	0	6	35	1.25
1695367--1695415	22	2.2	23	82	10	66	24	26	22	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1706330--1706381	21	2.5	21	100	0	104	23	28	25	23	1.99
1711685--1711744	22	2.7	22	94	0	102	26	31	26	15	1.95
1715432--1715468	18	2.1	18	100	0	74	35	10	27	27	1.90
1716692--1716730	20	2.0	21	85	10	55	23	20	7	48	1.75
1717180--1717207	6	4.7	6	100	0	56	46	0	35	17	1.49
1722865--1722899	18	1.9	18	94	0	61	34	31	17	17	1.93
1729744--1729787	20	2.3	18	84	7	52	68	9	2	20	1.28
1731558--1731583	2	13.0	2	100	0	52	50	0	0	50	1.00
1738977--1739070	31	3.0	30	78	10	91	60	3	3	32	1.28
1739538--1739580	21	2.0	21	82	8	52	34	2	6	55	1.39
1746438--1746507	21	3.3	21	95	0	122	28	21	20	30	1.98
1754897--1754926	2	15.0	2	100	0	60	50	0	0	50	1.00
1756961--1757011	26	2.0	26	92	0	84	23	21	23	31	1.98
1758490--1758537	23	2.1	23	88	3	71	62	0	37	0	0.95
1759777--1759829	20	2.8	20	77	5	56	20	5	3	69	1.25
1764173--1764503	70	4.6	73	81	6	361	31	18	8	41	1.80
1764192--1764362	37	4.6	37	71	9	118	30	18	9	40	1.83
1764234--1764536	34	8.5	35	72	11	224	31	18	8	41	1.82
1764229--1764536	70	4.3	71	83	7	367	30	18	9	41	1.82
1764234--1764536	141	2.1	144	87	7	433	31	18	8	41	1.82
1770364--1770567	36	5.5	36	74	9	153	35	17	9	37	1.82
1770608--1770917	74	4.1	74	85	4	315	28	16	12	42	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1770760--1770896	36	3.7	37	71	8	127	30	15	11	42	1.82
1770685--1770917	74	3.1	74	91	3	355	29	16	12	42	1.84
1770727--1770918	37	5.1	37	65	10	113	30	16	10	43	1.81
1770921--1771015	39	2.5	38	83	5	104	26	18	16	37	1.92
1770987--1771180	21	10.4	21	64	24	103	25	23	12	38	1.90
1770965--1771080	57	2.1	56	91	1	187	24	20	13	41	1.89
1771135--1771164	15	2.0	15	93	0	51	30	26	10	33	1.89
1771022--1771559	39	14.1	39	87	1	605	28	18	15	36	1.92
1773439--1773463	12	2.1	12	100	0	50	24	8	28	40	1.83
1775147--1775207	30	2.0	30	81	6	70	24	8	6	60	1.49
1782726--1782927	111	1.8	111	82	2	262	32	12	32	22	1.92
1783624--1784147	264	2.0	257	96	3	969	25	19	19	35	1.95
1785299--1785418	60	2.0	60	100	0	240	25	10	23	41	1.85
1793096--1793130	18	1.9	18	100	0	70	25	34	22	17	1.96
1793182--1793230	21	2.3	21	78	0	62	38	24	10	26	1.87
1800220--1800259	21	1.9	21	89	0	62	10	25	40	25	1.86
1800240--1800302	20	2.9	21	79	9	65	15	25	34	23	1.95
1809711--1809756	21	2.2	21	84	0	56	36	21	15	26	1.93
1820407--1820992	289	2.0	289	98	0	1127	39	12	10	37	1.77
1825389--1825424	17	2.1	18	89	5	56	61	0	2	36	1.11
1827366--1827409	20	2.1	21	95	4	81	36	13	0	50	1.42
1838034--1838147	41	2.8	42	82	7	137	38	0	0	60	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1838034--1838125	3	31.3	3	77	16	95	34	1	0	64	1.01
1847479--1847529	23	2.2	23	79	6	59	21	11	0	66	1.23
1851056--1851098	15	2.8	15	78	3	50	72	0	16	11	1.13
1851098--1851142	2	22.5	2	100	0	90	51	0	0	48	1.00
1852714--1853146	122	3.5	123	90	2	651	42	13	18	26	1.86
1853516--1853598	3	28.0	3	79	16	93	34	1	0	63	1.02
1860037--1860062	3	8.7	3	100	0	52	0	0	30	69	0.89
1860100--1860124	11	2.3	11	100	0	50	0	32	12	56	1.36
1868211--1868241	15	2.1	15	93	0	53	45	0	0	54	0.99
1874711--1874790	29	2.8	29	94	0	133	32	13	16	37	1.88
1881515--1881578	20	3.2	20	90	0	101	46	4	21	26	1.71
1881738--1881810	36	2.0	35	84	10	94	47	4	0	47	1.21
1889417--1889479	25	2.5	25	97	0	117	50	19	14	15	1.77
1904553--1904611	20	3.0	20	73	9	66	69	1	6	22	1.21
1904573--1904688	62	1.9	59	79	15	128	66	2	6	24	1.29
1904809--1904851	18	2.4	18	88	0	59	72	0	4	23	1.04
1905436--1905464	12	2.3	13	94	5	51	58	3	0	37	1.15
1905752--1906515	200	3.8	200	86	2	978	27	19	19	33	1.96
1906577--1906862	86	3.3	86	87	0	392	20	22	23	33	1.97
1907625--1907719	45	2.1	45	94	1	165	20	10	14	54	1.69
1912102--1912136	16	2.2	16	100	0	70	71	0	0	28	0.86
1912253--1912291	20	2.0	20	85	10	53	74	2	5	17	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912954--1912982	12	2.3	13	94	5	51	58	3	0	37	1.15
1915338--1915400	32	2.0	32	93	6	110	38	17	22	22	1.93
1919899--1920310	55	7.6	54	84	7	444	29	25	16	28	1.97
1921532--1921617	20	4.4	20	71	15	72	8	20	0	70	1.12
1921478--1921620	66	2.2	67	80	12	154	9	18	1	71	1.20
1921524--1921655	57	2.3	55	80	14	144	8	19	0	71	1.10
1921562--1921650	13	6.7	12	71	16	52	5	17	0	76	0.98
1921614--1921650	19	1.9	20	88	5	58	2	16	0	81	0.81
1930508--1930633	45	2.8	45	91	1	189	40	22	10	26	1.86
1939445--1939511	28	2.4	27	78	11	73	11	22	4	61	1.48
1944429--1944462	12	2.9	12	86	4	52	50	8	11	29	1.69
1947758--1947801	15	3.0	15	93	3	72	20	27	20	31	1.97
1952079--1952139	2	30.5	2	93	0	104	50	3	0	45	1.17
1954052--1954090	12	3.2	12	78	7	51	61	10	15	12	1.56
1959771--1959848	26	3.0	25	84	5	66	43	19	15	21	1.87
1959781--1959848	26	2.6	26	92	2	109	42	20	14	22	1.88
1965054--1965411	178	2.0	179	99	0	709	24	15	13	46	1.82
1967789--1967866	20	3.9	19	75	15	68	30	25	20	23	1.98
1967789--1967866	41	1.9	41	89	5	122	30	25	20	23	1.98
1975079--1975118	15	2.5	16	84	12	55	50	25	20	5	1.68
1976316--1976497	91	2.0	91	100	0	364	35	6	16	41	1.74
1979747--1980102	181	2.0	182	89	2	556	37	7	15	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1981379--1981434	21	2.7	21	82	0	76	33	25	17	23	1.96
1981379--1981474	42	2.3	42	83	3	113	35	21	14	28	1.93
1981379--1981449	21	3.4	21	80	0	70	38	21	16	23	1.93
1983000--1983157	21	7.8	20	70	7	77	37	25	17	18	1.93
1983125--1983317	20	9.6	20	81	5	219	35	26	18	19	1.95
1983696--1983766	33	2.2	33	94	0	124	11	23	16	47	1.79
1983845--1983922	41	1.9	41	97	0	147	44	16	25	12	1.83
1983846--1983921	21	3.7	21	83	3	109	46	17	25	11	1.82
1983941--1984068	19	7.1	19	71	19	78	11	25	17	45	1.82
1983963--1984019	14	3.7	14	75	20	60	10	24	21	43	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12