Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008338.1 Hibiscus syriacus cultivar Beakdansim tig00111059_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2210178

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  12  of  12  ( 1386 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2087239--2087470
37
6.2
36
83
11
270
43
4
6
45
1.49
2087436--2087533
31
3.2
30
88
7
135
46
3
3
46
1.33
2087436--2087533
32
3.2
31
89
4
137
46
3
3
46
1.33
2087532--2087612
37
2.2
38
84
6
105
46
0
3
49
1.19
2087496--2087603
40
2.7
41
79
15
118
49
0
4
45
1.29
2087609--2087653
16
2.7
17
83
13
58
24
2
2
71
1.09
2088170--2088214
24
1.9
24
86
13
67
64
33
2
0
1.06
2088954--2089001
13
3.6
13
81
13
53
18
8
0
72
1.08
2096184--2096222
19
2.0
20
90
5
62
58
2
0
38
1.12
2096766--2096802
15
2.5
15
91
4
58
29
0
0
70
0.88
2096970--2097040
33
2.1
34
84
5
90
45
25
25
4
1.71
2097874--2097938
34
1.9
34
81
12
80
18
9
6
66
1.41
2098014--2098062
21
2.3
21
89
6
73
22
0
0
77
0.77
2098023--2098069
5
9.2
5
80
13
51
17
2
0
80
0.80
2098014--2098069
13
4.3
13
80
10
53
19
1
0
78
0.84
2098025--2098070
21
2.2
21
96
0
83
15
2
0
82
0.76
2098593--2098631
20
1.9
21
89
5
62
46
2
2
48
1.29
2099818--2099861
19
2.2
20
80
15
56
68
13
0
18
1.22
2099889--2099917
2
14.5
2
100
0
58
48
0
0
51
1.00
2100122--2100151
14
2.1
14
93
0
51
16
0
16
66
1.25
2112163--2112221
28
2.1
28
100
0
118
35
13
23
27
1.92
2116640--2116672
16
2.0
17
94
5
59
42
0
0
57
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2116640--2116673
17
2.0
17
94
0
59
44
0
0
55
0.99
2117563--2117651
43
2.1
42
95
4
162
23
10
11
55
1.65
2118207--2118235
2
15.0
2
92
7
51
51
0
0
48
1.00
2121472--2121549
30
2.6
30
77
4
86
32
15
11
41
1.83
2124515--2124605
42
2.2
41
80
11
105
52
1
3
42
1.24
2127084--2127232
74
2.0
75
96
3
275
33
9
23
33
1.87
2130557--2130598
20
2.1
20
100
0
84
19
26
21
33
1.97
2136577--2136614
12
3.2
12
92
0
58
23
0
5
71
1.07
2148630--2148667
19
2.0
20
89
5
60
28
15
13
42
1.85
2150072--2150134
33
1.9
33
100
0
126
22
30
12
34
1.91
2150194--2150240
21
2.2
21
85
7
60
40
17
12
29
1.86
2156366--2156415
11
4.6
11
82
2
66
72
10
16
2
1.21
2156363--2156414
22
2.4
22
90
0
86
73
11
13
1
1.19
2167892--2167965
33
2.2
33
92
0
121
36
20
17
25
1.94
2175241--2175297
17
3.1
19
76
23
52
66
1
3
28
1.18
2175262--2175299
15
2.4
17
91
8
62
71
0
2
26
1.00
2175262--2175305
17
2.6
17
82
13
56
68
0
2
29
1.02
2177725--2177800
23
3.3
23
84
0
107
14
17
14
53
1.72
2180473--2180555
3
27.7
3
90
4
114
62
1
0
36
1.03
2181884--2181951
24
3.0
21
70
16
55
70
0
2
26
1.01
2182194--2182236
18
2.5
17
85
7
61
67
2
4
25
1.22
2183387--2184110
105
7.0
105
93
1
1149
22
17
26
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2183387--2184110
207
3.5
208
90
2
1141
22
17
26
33
1.96
2183388--2184110
312
2.3
313
92
2
1161
22
17
26
33
1.96
2184536--2184602
29
2.3
26
74
20
62
28
16
10
44
1.80
2184890--2185009
36
3.3
36
81
6
143
42
14
20
22
1.88
2185974--2186017
22
2.0
22
91
8
72
27
11
22
38
1.88
2186604--2186654
23
2.2
23
86
6
68
0
13
5
80
0.89
2186605--2186678
29
2.4
29
82
6
94
0
16
5
78
0.93
2186620--2186670
9
5.6
9
80
11
50
0
9
5
84
0.78
2186622--2186661
20
1.9
22
90
10
66
0
10
5
85
0.75
2187849--2187887
8
5.0
8
84
6
53
58
12
17
10
1.61
2187849--2187887
15
2.5
15
87
4
51
58
12
17
10
1.61
2190678--2190740
19
3.2
19
74
21
58
73
1
3
22
1.07
2190869--2190973
45
2.4
45
78
13
105
57
1
5
35
1.34
2190982--2191024
18
2.5
17
85
7
61
67
2
4
25
1.22
2191396--2191457
30
2.1
30
87
0
88
32
17
4
45
1.70
2191601--2191625
11
2.3
11
100
0
50
72
0
8
20
1.10
2195783--2195812
14
2.1
14
93
0
51
40
6
30
23
1.80
2202448--2202522
22
3.4
22
86
0
105
29
20
25
25
1.99
2203134--2203174
21
2.0
21
90
0
64
29
19
24
26
1.98
2206429--2206463
4
9.2
4
87
12
56
0
22
0
77
0.78
2206431--2206459
14
2.1
14
100
0
58
0
20
0
79
0.74
2206429--2206464
18
2.0
18
100
0
72
0
22
0
77
0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12

The End!