genome.fa.s8374.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008374.1 Hibiscus syriacus cultivar Beakdansim tig00111131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1731758

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1709986--1710076	33	2.8	33	91	5	141	7	18	28	45	1.77
1710157--1710626	92	5.1	93	97	1	885	45	18	12	22	1.83
1710157--1710626	185	2.6	185	98	0	899	45	18	12	22	1.83
1712323--1712412	14	5.7	14	72	23	72	43	23	24	8	1.82
1712317--1712429	33	3.4	33	93	0	199	46	21	23	9	1.80
1712322--1712434	19	6.8	18	70	23	79	44	22	23	9	1.82
1712446--1712500	14	3.6	14	73	21	56	9	25	23	41	1.83
1712430--1712500	33	2.2	33	94	0	124	8	22	25	43	1.81
1712441--1712522	33	2.5	33	89	2	119	9	25	21	42	1.84
1712453--1712541	20	4.8	20	72	19	75	12	24	19	43	1.85
1712621--1712690	33	2.1	33	91	0	113	47	18	22	11	1.81
1712872--1712926	22	2.5	22	81	0	74	20	16	40	23	1.91
1713072--1713240	60	2.8	60	84	0	239	20	19	26	33	1.96
1713070--1713224	20	7.7	20	84	4	213	21	20	25	32	1.97
1713277--1713328	20	2.6	20	96	0	95	21	13	26	38	1.90
1719950--1720039	27	3.6	27	66	25	72	38	2	1	57	1.18
1719962--1720009	19	2.6	18	80	9	60	37	4	0	58	1.18
1719950--1720046	46	2.1	45	90	1	149	39	2	1	57	1.17
1720096--1720158	29	2.2	29	88	5	94	55	0	3	41	1.16
1720276--1720337	32	1.9	33	83	3	81	40	8	3	48	1.49
1720468--1720507	19	2.0	20	86	13	57	37	0	2	60	1.11
1720565--1720597	6	5.7	6	96	3	59	51	0	12	36	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1721490--1721564	31	2.4	31	95	0	132	53	24	1	21	1.54
1722125--1722175	23	2.1	23	85	10	66	60	3	0	35	1.15
1722130--1722187	24	2.4	24	82	8	64	67	3	0	29	1.07

Tables:   1   2   3   4   5   6   7   8   9   10

The End!