genome.fa.s8374.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008374.1 Hibiscus syriacus cultivar Beakdansim tig00111131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1731758

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568301--568514	40	5.3	39	72	13	119	32	13	22	32	1.92
574164--574189	2	13.0	2	100	0	52	50	0	0	50	1.00
574277--574360	41	2.0	41	95	0	150	41	16	4	36	1.70
574669--574744	20	3.8	19	81	8	73	42	11	15	30	1.83
574669--574744	40	1.9	39	86	2	107	42	11	15	30	1.83
576419--576451	16	2.1	16	100	0	66	45	18	0	36	1.49
578704--578764	21	2.9	21	80	9	70	11	26	37	24	1.89
593043--593298	127	2.0	125	90	3	397	35	14	12	37	1.83
593756--593788	16	1.9	18	88	11	52	63	6	3	27	1.32
593906--593948	20	2.2	20	95	0	77	41	0	13	44	1.44
599993--600054	23	2.7	23	100	0	124	20	25	24	29	1.99
608647--609045	168	2.5	154	80	11	480	24	20	22	33	1.97
608733--609071	84	4.0	84	89	0	500	24	19	21	33	1.97
609127--609425	114	2.5	114	84	5	355	26	18	22	32	1.97
609431--609661	64	3.6	64	89	0	345	28	15	21	35	1.94
609431--609661	128	1.8	128	91	0	381	28	15	21	35	1.94
614055--614092	20	1.9	20	84	10	51	55	2	13	28	1.51
615265--615289	12	2.1	12	100	0	50	44	8	16	32	1.76
625864--625903	20	2.0	21	85	5	55	55	0	7	37	1.29
626203--626236	17	2.1	16	88	5	50	76	0	0	23	0.79
626626--626672	22	2.1	22	100	0	94	21	21	31	25	1.98
626630--626680	22	2.3	22	93	0	84	23	25	31	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626708--626749	20	2.1	20	86	0	57	11	35	33	19	1.88
627359--627407	20	2.5	20	96	0	89	16	12	34	36	1.86
628037--628374	82	4.1	81	84	1	399	23	21	23	31	1.99
628059--628381	80	4.0	80	84	2	385	23	21	24	31	1.98
628418--628474	15	3.5	15	76	17	60	40	15	21	22	1.91
628421--628513	17	5.3	18	68	29	67	43	16	20	20	1.88
628414--628514	34	2.9	34	89	4	130	40	16	19	22	1.91
628414--629042	138	4.5	138	86	3	841	41	13	18	27	1.87
628702--628762	21	2.9	21	87	0	86	42	9	18	29	1.82
628414--629042	282	2.3	276	85	4	906	41	13	18	27	1.87
630379--630641	95	2.7	95	85	3	330	32	17	16	33	1.93
634574--634625	26	2.0	26	85	7	70	67	3	9	19	1.35
634821--634872	27	1.9	26	85	14	70	57	1	3	36	1.28
634932--634968	2	18.5	2	100	0	74	51	0	0	48	1.00
637263--637302	17	2.4	17	91	4	64	37	0	5	57	1.21
641666--641716	20	2.5	20	87	0	66	25	15	21	37	1.93
646786--646895	50	2.1	51	91	5	177	47	22	9	20	1.78
650802--650853	19	2.8	19	91	2	79	34	23	17	25	1.96
650905--650945	21	1.9	21	85	5	55	29	17	17	36	1.92
650942--650994	20	2.7	20	93	0	88	41	18	18	20	1.91
650983--651068	40	2.1	40	85	6	111	29	29	22	19	1.98
651004--651068	20	3.2	20	93	0	103	27	29	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651238--651309	22	3.3	21	84	3	90	19	38	16	25	1.92
651735--651773	20	2.0	20	94	0	69	12	12	17	56	1.67
651737--651780	20	2.2	20	87	0	61	13	13	18	54	1.71
653469--653520	18	2.9	18	94	0	86	34	13	7	44	1.72
653772--653930	20	8.6	20	73	17	119	38	22	20	18	1.93
653790--653933	54	2.7	53	84	6	200	36	22	20	20	1.95
653864--653926	33	1.9	33	93	0	108	34	23	23	17	1.96
653957--654023	20	3.3	20	82	0	80	22	14	23	38	1.92
654010--654053	20	2.2	20	100	0	88	13	11	22	52	1.72
654534--654637	21	5.0	21	73	6	86	23	34	18	24	1.96
654559--654640	42	2.0	42	85	4	112	21	37	19	20	1.94
656167--656239	33	2.2	34	87	2	103	17	21	20	39	1.92
656253--656437	20	9.9	20	74	13	160	23	20	21	34	1.97
656275--656429	54	2.9	54	91	1	249	22	20	20	36	1.96
656200--656437	74	3.2	73	80	6	239	22	21	20	35	1.96
656608--656661	12	4.5	12	88	0	72	16	0	25	57	1.40
656615--656660	6	7.7	6	90	0	74	17	0	21	60	1.35
656608--656660	18	2.9	18	97	0	97	16	0	24	58	1.38
658917--658970	24	2.2	24	93	0	90	40	20	18	20	1.91
659791--659877	20	4.3	20	78	8	95	20	19	28	31	1.97
659924--659971	20	2.4	20	100	0	96	37	20	22	18	1.94
659992--660038	19	2.4	19	82	3	58	25	14	29	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660004--660040	19	1.9	19	94	0	65	21	16	29	32	1.95
668020--668059	21	1.9	21	89	0	62	32	22	25	20	1.98
668735--668834	45	2.2	45	82	3	112	28	14	21	37	1.91
674608--674647	20	2.0	20	90	0	62	15	25	35	25	1.94
682466--682585	62	1.9	64	82	3	154	25	19	19	36	1.94
687771--687805	18	1.9	18	88	11	54	42	2	0	54	1.15
689614--689653	20	2.0	20	100	0	80	30	20	5	45	1.72
690050--690091	15	2.7	15	92	3	66	42	19	2	35	1.64
690050--690102	15	3.5	15	87	7	54	45	15	1	37	1.57
699850--699898	2	26.0	2	88	12	77	51	0	0	48	1.00
700758--700798	17	2.3	18	87	4	57	9	21	2	65	1.34
700786--700818	16	1.9	18	88	11	52	3	33	0	63	1.10
700848--700881	17	2.0	17	88	0	50	17	20	17	44	1.87
701499--701576	3	26.7	3	94	5	142	66	0	0	33	0.92
710684--710719	18	1.9	19	88	5	56	0	11	22	66	1.22
711121--711187	3	21.7	3	90	6	107	64	0	0	35	0.94
713070--713130	21	2.8	22	80	7	63	27	1	21	49	1.59
716986--717031	21	2.2	21	96	0	83	60	0	0	39	0.97
717538--717622	31	2.8	29	72	11	82	50	3	0	45	1.18
717593--717625	14	2.4	14	85	15	50	51	0	0	48	1.00
717800--717854	25	2.4	23	80	16	69	34	9	10	45	1.71
717940--718712	147	5.2	146	87	2	1062	33	13	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717940--718712	73	10.5	74	86	2	1047	33	13	14	38	1.85
719674--719717	21	2.1	21	100	0	88	36	18	13	31	1.90
727699--727745	17	2.6	17	83	6	58	38	17	12	31	1.87
727714--727747	17	2.0	17	94	0	59	38	17	11	32	1.86
728572--728617	15	3.1	15	93	0	83	32	13	15	39	1.85
730976--731258	45	6.0	45	84	10	379	38	7	22	31	1.82
731121--731233	57	2.0	55	89	8	174	38	8	23	30	1.85
731660--731700	21	2.0	21	95	0	73	26	19	26	26	1.99
734102--734197	30	3.1	30	74	22	92	77	1	12	9	1.05
734102--734197	32	3.1	30	78	20	99	77	1	12	9	1.05
739567--739620	24	2.2	24	86	0	72	20	31	24	24	1.98
739574--739621	24	2.0	24	91	0	78	22	33	20	22	1.97
742005--742057	19	2.7	19	82	2	61	35	11	22	30	1.89
742026--742077	20	2.6	20	84	6	61	26	15	25	32	1.95
743785--743862	36	2.2	36	92	0	129	17	37	12	32	1.88
743785--743881	36	2.7	36	87	3	115	19	37	13	29	1.90
744726--744798	31	2.4	31	83	4	94	36	23	17	21	1.94
747870--747913	20	2.2	20	92	4	72	20	6	4	68	1.31
757700--757761	27	2.3	27	81	8	72	56	4	9	29	1.52
759512--759870	106	3.5	104	81	6	424	33	24	18	23	1.97
759899--760019	35	3.4	35	65	28	92	33	29	15	20	1.94
759904--760049	72	2.0	72	100	0	292	32	30	16	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
761643--761687	20	2.3	20	88	3	74	20	6	4	68	1.29
765343--765374	14	2.2	15	94	5	57	75	3	0	21	0.95
765479--765554	28	2.6	29	78	14	84	55	3	9	31	1.50
766760--766836	3	25.0	3	84	5	91	58	0	0	41	0.98
767145--767535	177	2.2	177	91	0	622	27	20	19	32	1.97
768594--768755	54	3.0	54	93	0	270	28	23	14	33	1.94
769924--769974	9	5.6	9	77	11	50	0	23	0	76	0.79
769927--769977	14	3.6	14	89	2	66	0	21	0	78	0.75
769932--769979	22	2.1	22	85	11	62	0	18	0	81	0.70
772312--772396	43	2.0	43	88	6	129	37	22	8	31	1.84

Tables:   1   2   3   4   5   6   7   8   9   10