genome.fa.s8374.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008374.1 Hibiscus syriacus cultivar Beakdansim tig00111131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1731758

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1105 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367037--367277	50	4.8	50	100	0	482	25	14	21	38	1.91
367961--368709	114	6.5	114	99	0	1444	36	14	19	28	1.92
368956--369037	3	27.7	3	95	2	148	35	0	0	64	0.94
370455--370499	22	2.2	20	84	8	54	37	2	4	55	1.32
374117--374175	29	2.0	29	83	9	75	74	6	1	16	1.11
374123--374197	17	4.2	17	75	14	53	76	8	1	14	1.08
374122--374197	20	3.5	22	76	18	72	76	7	1	14	1.07
374138--374190	12	4.5	12	81	15	58	77	7	0	15	0.98
377635--377661	13	2.1	13	100	0	54	14	22	33	29	1.94
381107--381264	64	2.5	64	78	9	169	34	18	17	28	1.94
381929--382008	42	1.9	42	82	5	99	35	21	21	22	1.96
382994--383039	21	2.2	22	84	11	69	50	4	17	28	1.65
383785--383854	15	4.7	15	71	16	56	50	2	0	47	1.16
383764--383968	52	3.9	53	70	23	132	45	2	2	49	1.28
387347--387406	30	2.0	30	83	6	77	56	8	15	20	1.64
390149--390247	44	2.6	35	72	26	94	32	17	11	39	1.84
390160--390260	44	2.3	44	100	0	202	30	18	7	42	1.79
397387--397453	2	34.0	2	96	3	127	49	0	0	50	1.00
397709--397760	15	3.5	15	74	10	52	51	0	5	42	1.25
399178--399300	3	41.0	3	79	13	130	61	0	0	37	1.02
399181--399299	29	4.3	27	81	13	127	61	0	0	37	1.02
400889--401050	54	3.0	54	88	3	236	27	22	13	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412866--412933	23	3.0	23	83	12	79	45	1	1	51	1.19
414637--414729	3	32.0	3	80	12	97	64	0	1	34	1.01
414655--414729	17	4.6	16	84	11	89	68	0	1	30	0.98
418968--420108	466	2.5	464	92	1	1842	42	13	18	25	1.87
426060--426115	18	3.1	18	85	12	78	25	30	10	33	1.90
426527--426602	11	7.0	10	71	15	53	77	3	1	17	0.99
426527--426602	13	5.5	14	74	12	59	77	3	1	17	0.99
426529--426602	28	2.7	27	80	12	87	77	4	1	17	1.00
431129--431455	162	2.0	162	97	2	613	37	13	14	35	1.85
431771--431809	20	2.0	20	95	5	71	51	10	10	28	1.68
433563--433601	20	1.9	21	89	5	62	20	38	28	12	1.89
439985--440328	36	9.6	34	76	15	268	44	5	3	46	1.44
440016--440128	56	2.0	57	84	8	151	44	3	4	47	1.40
440054--440089	18	2.0	18	94	0	63	38	2	5	52	1.39
440051--440090	9	4.1	10	84	15	57	40	2	7	50	1.44
439985--440329	75	4.8	74	82	9	340	44	5	3	46	1.44
440071--440329	36	7.0	37	84	8	332	45	5	3	45	1.43
440748--442124	80	17.0	80	85	3	1756	24	18	23	33	1.97
440793--442124	321	4.1	321	86	2	1742	24	18	23	33	1.97
444477--444545	3	23.0	3	82	5	86	66	1	2	28	1.14
444874--445552	113	5.9	113	89	4	747	28	19	14	37	1.92
446710--446747	18	2.1	18	90	0	58	55	2	7	34	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447066--447098	10	3.2	10	91	8	57	0	21	0	78	0.75
447065--447098	11	3.2	11	83	8	52	0	20	0	79	0.73
447070--447102	13	2.5	13	95	5	57	0	24	0	75	0.80
459351--459404	21	2.6	21	96	0	99	27	20	24	27	1.99
460527--460791	97	2.7	95	83	6	327	30	16	17	35	1.92
464785--464874	28	3.4	26	71	21	78	46	5	3	44	1.43
464836--464912	39	1.9	39	87	12	113	42	5	5	46	1.48
464907--464942	2	18.5	2	94	5	65	50	0	0	50	1.00
464878--465150	70	3.9	68	77	9	210	43	4	3	47	1.40
464949--465135	36	5.2	36	88	3	279	44	4	3	47	1.42
465120--465151	2	16.5	2	93	6	57	50	0	0	50	1.00
465083--465188	50	2.1	48	83	13	126	49	6	0	44	1.28
465942--465973	14	2.3	14	100	0	64	34	12	6	46	1.67
466206--466279	36	2.1	36	97	0	139	31	5	9	54	1.55
473781--473820	19	2.0	20	85	14	55	47	2	0	50	1.14
473810--473840	15	2.1	15	93	0	53	70	0	0	29	0.87
473813--473861	16	3.1	16	79	5	55	67	2	0	30	1.02
474438--474510	33	2.2	33	90	5	110	36	2	6	53	1.42
476257--476304	2	24.5	2	95	4	89	50	0	0	50	1.00
489840--489890	24	2.0	26	85	7	70	17	13	11	56	1.66
489867--489900	10	3.4	10	91	0	59	17	11	8	61	1.54
490308--490340	16	2.1	16	100	0	66	6	12	24	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497524--497587	32	2.0	32	84	0	83	20	14	21	43	1.87
502246--502286	19	2.2	19	86	4	57	21	9	0	68	1.18
502220--502286	18	3.6	19	74	10	66	25	7	0	67	1.17
504664--504697	16	2.1	17	89	10	54	29	5	20	44	1.75
504825--504882	30	1.9	30	86	6	82	25	18	20	34	1.96
505677--505703	2	13.5	2	100	0	54	0	0	48	51	1.00
507156--507205	15	3.3	15	100	0	100	14	24	34	28	1.93
508101--508141	18	2.3	18	95	0	73	34	12	26	26	1.92
508782--508815	16	2.1	17	89	10	54	29	5	20	44	1.75
508943--509000	30	1.9	30	86	6	82	25	18	20	34	1.96
510737--510800	23	2.8	23	80	0	74	28	21	28	21	1.99
511003--511080	30	2.6	30	85	6	95	34	19	5	41	1.73
511455--511504	19	2.6	19	100	0	100	22	30	18	30	1.97
511389--511565	83	2.1	83	82	6	207	25	20	20	33	1.97
513760--513815	19	2.8	20	86	2	69	37	1	14	46	1.55
513836--513877	21	2.0	21	95	0	75	26	23	21	28	1.99
514451--514538	23	3.8	23	68	14	63	29	25	25	20	1.99
520998--521044	21	2.2	21	88	7	69	27	25	19	27	1.99
521755--521798	23	1.9	23	85	0	61	29	25	27	18	1.98
523455--523492	12	3.2	12	81	7	51	13	5	7	73	1.22
523585--523691	53	2.0	54	89	3	164	45	15	18	19	1.85
523848--523897	15	3.1	16	80	8	57	24	30	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
523843--523887	15	2.9	16	76	6	56	24	31	20	24	1.98
523923--523991	32	2.2	32	91	0	111	20	26	30	23	1.98
523923--523991	15	4.3	17	73	12	65	20	26	30	23	1.98
523935--523994	15	3.9	15	78	8	66	21	25	30	23	1.99
526012--526116	41	2.5	41	80	10	124	28	0	12	58	1.41
526756--526789	17	2.0	17	88	0	50	23	0	2	73	0.97
527901--527937	12	3.1	12	92	0	65	35	29	16	18	1.93
529975--530014	21	1.9	21	94	0	71	42	12	12	32	1.80
533230--533265	14	2.6	14	90	0	54	30	0	25	44	1.54
538063--538134	36	2.0	36	100	0	144	44	16	16	22	1.86
541716--541744	15	1.9	15	100	0	58	13	34	13	37	1.85
543115--543166	15	3.4	15	91	2	86	40	1	7	50	1.42
543524--543595	7	10.3	7	85	5	101	13	0	37	48	1.43
543633--543683	20	2.6	19	84	6	66	41	5	5	47	1.52
543925--546240	4	586.8	4	97	2	4397	49	25	0	24	1.51
546588--546668	2	40.5	2	78	9	85	51	2	2	43	1.28
546596--546666	28	2.5	28	97	0	133	52	2	2	42	1.31
546596--546679	28	3.0	27	91	6	116	54	3	2	39	1.31
547000--547059	22	2.7	22	65	0	57	33	25	5	36	1.78
547151--547184	15	2.3	15	89	0	50	44	2	2	50	1.32
547166--547272	26	4.0	26	74	14	67	42	2	4	49	1.38
547234--547278	13	3.5	13	84	0	63	42	4	4	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548595--549291	216	3.2	215	92	1	1191	28	13	8	50	1.70
549906--550004	50	2.0	50	84	4	128	32	14	14	39	1.85
550663--550713	2	26.0	2	96	4	95	50	0	0	49	1.00
567522--567594	20	3.7	20	72	17	71	35	27	16	20	1.94
567587--567640	20	2.6	21	79	8	65	27	25	12	33	1.93
567587--567716	40	3.2	40	84	2	116	26	24	13	36	1.92
567609--567736	40	3.2	39	85	4	157	26	24	13	35	1.92
567605--567716	20	5.6	20	74	4	91	25	25	12	37	1.91
568156--568206	17	2.9	17	91	2	84	0	29	3	66	1.09
568354--568408	20	2.6	20	82	8	65	38	10	23	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10