genome.fa.s8375.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008375.1 Hibiscus syriacus cultivar Beakdansim tig00111132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1210889

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353458--353499	22	1.9	22	90	0	66	45	19	14	21	1.85
355843--355880	19	2.0	19	100	0	76	31	10	15	42	1.81
355933--356069	59	2.3	59	82	3	159	32	12	13	40	1.82
360844--360906	33	1.9	33	90	0	99	20	22	34	22	1.96
364585--364635	26	1.9	27	84	4	68	41	17	13	27	1.87
367088--367113	13	2.0	13	100	0	52	46	23	15	15	1.83
367111--367161	14	3.6	14	76	10	50	25	19	29	25	1.99
367462--367501	21	1.9	21	85	10	55	27	17	22	32	1.96
371311--371347	17	2.1	19	85	10	51	43	5	13	37	1.67
372149--372206	30	2.0	29	89	3	89	36	6	17	39	1.76
372314--372348	18	1.9	18	94	0	61	25	20	28	25	1.99
374291--374367	24	3.3	24	73	12	70	37	24	19	18	1.94
374323--374379	23	2.5	23	82	5	62	33	26	24	15	1.95
378868--378908	17	2.3	19	84	12	52	41	7	14	36	1.74
379288--379348	2	30.5	2	100	0	122	49	0	0	50	1.00
381960--382022	26	2.4	26	97	0	117	42	0	7	49	1.32
383292--383333	21	2.0	21	95	0	75	26	14	14	45	1.83
385328--385407	30	2.7	30	94	0	142	2	31	20	46	1.64
387760--387865	30	3.6	30	92	1	160	37	10	15	36	1.81
387952--388054	28	3.5	28	81	7	107	37	10	12	38	1.78
387952--388054	31	3.5	30	80	5	111	37	10	12	38	1.78
389386--389441	10	5.4	10	83	8	76	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389386--389441	21	2.7	21	100	0	112	57	0	0	42	0.99
389849--389890	13	3.1	13	80	19	50	50	4	0	45	1.23
392727--392762	18	2.0	18	100	0	72	27	50	5	16	1.68
392728--392768	18	2.3	18	91	0	64	31	43	4	19	1.72
393435--393472	2	19.0	2	100	0	76	50	0	0	50	1.00
395837--395892	16	3.3	17	76	16	62	44	5	0	50	1.25
395839--395876	17	2.3	16	90	4	58	44	5	0	50	1.24
395835--395888	17	3.1	17	76	12	56	44	5	0	50	1.25
396928--396962	18	1.9	18	100	0	70	25	0	0	74	0.82
397057--397211	10	16.3	10	74	20	56	25	3	1	69	1.16
397036--397115	17	4.8	16	78	15	74	32	1	1	65	1.09
396985--397221	108	2.1	113	87	8	335	25	5	2	67	1.24
397124--397190	21	3.1	21	70	18	57	19	5	2	71	1.20
397209--397234	2	13.0	2	100	0	52	50	0	0	50	1.00
397073--397301	126	1.8	126	85	3	327	26	5	3	65	1.30
397284--397323	20	2.0	21	85	5	55	27	10	0	62	1.27
397317--397350	14	2.5	13	90	9	50	17	0	0	82	0.67
397477--397566	20	4.2	21	68	13	67	12	14	0	73	1.10
397555--397599	14	2.9	16	72	27	51	8	6	11	73	1.25
398451--398498	21	2.3	20	82	3	60	12	12	0	75	1.06
398452--398498	20	2.4	19	82	10	58	12	12	0	74	1.07
407511--407629	63	1.9	59	85	6	157	52	11	22	13	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407608--407657	7	6.9	7	78	17	57	80	2	18	0	0.82
407610--407651	8	5.5	8	86	13	54	80	2	16	0	0.81
408595--408674	41	2.0	41	84	0	106	27	30	18	23	1.98
409552--409602	17	3.1	17	80	8	52	41	7	1	49	1.43
410664--410700	5	8.0	5	88	11	53	21	0	0	78	0.75
410667--410826	4	39.8	4	70	20	52	23	4	1	70	1.12
410664--410827	18	9.3	18	65	18	78	23	4	1	70	1.12
410755--410826	22	3.3	21	80	3	81	22	5	1	70	1.15
410779--410836	17	3.5	17	76	15	52	25	5	0	68	1.10
410770--410836	22	3.1	22	85	6	93	23	5	0	70	1.09
410770--410840	11	6.7	11	69	24	55	23	7	0	69	1.13
410904--410977	10	7.1	11	70	22	52	35	4	0	60	1.15
410909--410953	13	3.5	13	90	3	65	33	2	0	64	1.06
410904--410953	3	16.3	3	80	12	57	34	2	0	64	1.05
410730--410974	118	2.1	118	84	9	322	28	5	2	63	1.29
410730--411006	118	2.3	120	80	12	281	27	6	2	63	1.29
411170--411264	35	2.6	34	82	9	109	9	13	2	74	1.15
412914--412955	18	2.3	18	83	0	57	19	45	21	14	1.85
418032--418075	23	1.9	23	95	0	79	20	50	20	9	1.75
418013--418062	18	2.8	18	84	0	64	20	44	22	14	1.86
423305--423357	21	2.5	21	84	0	70	20	26	18	33	1.96
423347--423494	20	7.4	20	93	1	235	37	22	21	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423670--423725	22	2.6	22	94	2	96	25	37	8	28	1.86
424376--424429	24	2.2	24	93	0	90	20	18	20	40	1.91
426396--426456	23	2.5	24	85	15	81	40	0	3	55	1.16
426396--426488	3	30.0	3	80	8	73	40	1	2	55	1.19
428146--428219	33	2.2	32	83	9	87	22	6	2	67	1.27
439857--439914	10	5.4	11	82	16	68	79	0	12	8	0.94
441039--441292	135	1.9	135	95	1	465	34	18	21	25	1.96
441179--441401	116	1.9	115	80	6	254	40	16	20	23	1.91
441467--441567	25	4.2	26	81	15	96	40	0	1	56	1.17
441467--441559	27	3.4	28	82	11	95	40	1	2	55	1.19
441467--441567	3	33.0	3	81	9	82	40	0	1	56	1.17
443165--443241	32	2.4	31	82	10	84	23	6	3	66	1.32
444276--444364	20	4.4	20	85	2	126	34	23	22	19	1.96
444498--444534	14	2.6	14	86	0	56	48	21	0	29	1.50
446479--446632	20	8.4	20	75	18	120	40	21	19	18	1.92
446519--446614	34	2.8	33	77	3	102	41	20	19	17	1.90
446693--446839	20	7.8	20	82	11	186	19	19	20	41	1.91
448718--448767	20	2.5	20	90	0	73	36	28	18	18	1.94
448811--448853	20	2.2	20	91	0	68	23	18	20	37	1.94
449445--449497	20	2.7	20	87	0	79	22	20	18	37	1.94
449485--449537	21	2.5	21	87	0	79	39	18	20	20	1.92
453686--453723	12	2.9	13	84	11	51	50	0	2	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455358--455463	30	3.6	29	79	3	88	40	8	12	38	1.73
455394--455467	29	2.5	29	82	2	85	45	6	9	37	1.63
455706--455757	19	2.7	19	77	16	54	50	1	5	42	1.37
455894--455936	17	2.4	18	81	14	54	58	0	0	41	0.98
455897--455936	18	2.3	17	82	4	53	57	0	0	42	0.98
456691--456724	17	2.0	17	88	0	50	44	20	2	32	1.67
459680--459718	10	3.8	10	86	3	51	25	30	23	20	1.98
459678--459718	20	2.0	21	90	4	66	24	29	26	19	1.98
467015--467066	24	2.2	24	86	3	70	46	21	21	11	1.82
467498--467535	15	2.6	15	84	16	53	39	2	5	52	1.38
473626--473670	23	2.0	23	86	8	65	48	13	2	35	1.54
474930--474983	29	1.9	27	88	7	81	46	7	5	40	1.55
476761--476793	2	16.5	2	87	12	50	48	0	3	48	1.17
477564--477679	58	2.0	58	100	0	232	43	15	12	29	1.83
478074--478144	33	2.2	33	87	2	99	42	15	9	32	1.80
490834--490858	12	2.1	12	100	0	50	64	0	0	36	0.94
496642--496753	57	2.0	57	94	0	197	34	26	15	23	1.94
500201--500250	26	1.9	26	88	8	75	70	0	10	20	1.16
500280--500408	4	31.2	4	69	21	54	75	1	2	20	1.00
500278--500402	9	12.8	9	69	18	63	75	1	2	20	1.01
500267--500402	40	3.4	39	73	11	100	74	1	3	20	1.05
500280--500405	49	2.5	50	75	15	127	75	1	2	20	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500443--500473	2	15.5	2	100	0	62	51	0	0	48	1.00
500370--500496	45	2.9	45	71	22	117	62	2	0	34	1.14
504827--504864	20	1.9	20	88	0	58	13	26	34	26	1.93
508281--508320	21	1.9	21	85	10	55	35	10	2	52	1.48
510766--510851	35	2.3	35	84	11	102	29	6	22	41	1.79
510838--511071	36	6.6	36	77	14	211	39	13	20	27	1.89
510872--511058	102	1.8	102	84	8	256	39	12	19	28	1.89
511136--511324	37	5.4	37	69	16	141	40	12	17	28	1.87
511131--511348	102	2.1	102	93	0	364	38	11	17	32	1.87
511257--511438	87	2.1	87	88	0	274	37	12	17	32	1.87

Tables:   1   2   3   4   5   6   7