genome.fa.s8375.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008375.1 Hibiscus syriacus cultivar Beakdansim tig00111132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1210889

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024793--1024828	14	2.6	14	95	0	63	30	0	25	44	1.54
1024957--1025009	14	3.4	14	72	22	52	43	22	26	7	1.80
1024943--1025024	33	2.5	33	93	0	137	43	19	23	13	1.86
1025020--1025170	19	8.7	19	68	21	98	15	22	19	41	1.90
1025024--1025150	33	3.9	32	87	8	193	14	22	19	42	1.88
1025017--1025149	66	2.0	66	97	0	248	16	22	19	41	1.90
1027636--1027689	24	2.2	24	90	0	81	40	20	16	22	1.91
1028460--1028511	21	2.5	21	87	3	70	38	17	23	21	1.93
1028538--1028587	20	2.5	20	76	0	64	40	22	16	22	1.91
1028805--1028888	20	4.2	20	77	6	98	39	22	22	15	1.92
1028915--1028982	19	3.8	19	83	12	92	13	20	17	48	1.80
1029119--1029155	14	2.6	14	86	0	56	48	21	0	29	1.50
1031001--1031068	20	3.5	20	85	2	93	39	23	22	14	1.91
1031057--1031147	14	5.9	14	68	20	56	48	23	16	12	1.79
1031041--1031152	33	3.4	33	91	1	181	47	22	17	12	1.81
1031041--1031163	65	1.9	66	88	5	187	47	23	17	12	1.81
1031159--1031268	14	6.7	18	74	18	73	12	19	22	45	1.84
1031181--1031252	14	4.9	14	80	12	90	11	16	25	47	1.79
1031166--1031237	32	2.2	32	92	2	117	12	18	23	45	1.83
1031253--1031307	20	2.8	19	83	8	65	16	23	23	36	1.94
1031784--1031823	18	2.2	18	90	0	62	12	17	45	25	1.83
1033121--1033179	20	3.0	20	87	0	73	42	22	18	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1033443--1033486	22	2.0	22	95	0	79	18	15	45	20	1.85
1043700--1043733	17	2.1	16	88	5	50	76	0	8	14	1.01
1054993--1055063	21	3.0	25	71	23	71	12	18	0	69	1.20
1054993--1055083	47	2.0	46	82	6	112	12	20	0	67	1.23
1056822--1056855	17	2.1	16	88	5	50	76	0	8	14	1.01
1059825--1059874	24	2.1	24	85	7	66	24	2	14	60	1.45
1062812--1062884	20	3.7	20	96	0	137	38	19	20	21	1.94
1063202--1063274	33	2.2	34	85	7	96	16	20	23	39	1.92
1063248--1063294	20	2.3	20	88	0	67	19	17	25	38	1.92
1065186--1065362	20	9.5	20	75	14	146	44	19	17	18	1.88
1065409--1065495	20	4.3	20	92	0	111	22	18	22	35	1.95
1065979--1066070	21	4.4	21	75	4	87	20	38	17	23	1.93
1067468--1067503	14	2.6	14	90	0	54	30	0	22	47	1.52
1067642--1067713	19	3.7	19	94	3	126	47	18	20	13	1.82
1067724--1067809	33	2.6	33	81	1	109	15	23	17	44	1.86
1067791--1067879	20	4.4	20	85	2	126	17	22	23	35	1.95
1070311--1070364	24	2.2	24	93	0	90	40	20	18	20	1.91
1070311--1070378	24	2.8	24	84	0	64	38	20	17	23	1.93
1071121--1071184	20	3.2	20	93	0	101	21	20	25	32	1.97
1071174--1071243	20	3.5	20	92	0	113	21	20	18	40	1.92
1071245--1071288	21	2.1	21	91	0	70	40	15	25	18	1.90
1073126--1073313	104	1.8	104	80	9	231	26	14	18	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073656--1073752	3	31.7	3	85	4	131	37	0	1	61	1.03
1082824--1083049	114	2.0	114	93	0	389	33	15	20	30	1.94
1085560--1085614	22	2.5	22	96	0	101	34	9	14	41	1.77
1086169--1087340	76	15.4	76	96	0	2040	23	20	21	35	1.96
1087471--1087564	3	30.7	3	84	4	125	37	1	0	61	1.03
1088384--1088486	7	14.7	7	94	0	179	56	0	41	1	1.10
1099896--1099936	8	5.2	8	82	5	57	34	0	29	36	1.58
1100004--1100376	128	2.9	128	97	0	710	23	25	19	31	1.98
1100769--1100867	33	3.0	34	80	5	130	38	3	4	54	1.35
1101381--1101492	21	5.3	20	94	3	143	18	26	35	18	1.95
1101384--1101516	42	3.2	42	82	8	137	21	23	36	19	1.95
1101496--1101543	21	2.3	21	85	0	60	22	12	39	25	1.89
1103267--1103352	31	2.7	32	78	8	95	59	2	0	38	1.10
1103272--1103358	16	5.3	16	73	11	61	60	2	0	36	1.09
1103270--1103339	15	4.7	15	74	10	63	60	1	0	38	1.06
1104580--1104635	21	2.7	21	94	0	94	32	12	19	35	1.89
1105703--1105742	21	1.9	21	89	0	62	20	17	27	35	1.95
1110809--1110856	23	2.2	22	85	10	64	37	2	8	52	1.44
1112224--1112268	19	2.2	20	92	7	74	20	4	0	75	0.97
1112294--1112355	20	3.1	20	77	11	56	8	12	0	79	0.94
1112295--1112364	21	3.2	21	78	15	54	8	11	1	78	1.02
1112427--1112476	18	2.7	18	79	14	57	20	12	0	68	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1116304--1116485	95	1.9	95	89	2	285	32	18	20	29	1.96
1117851--1118050	110	1.8	110	90	0	319	36	21	20	22	1.96
1118487--1118562	39	1.9	39	83	0	98	31	21	11	35	1.89
1118545--1118790	29	7.7	30	69	20	110	32	20	13	34	1.91
1118548--1118689	29	4.6	30	71	18	112	32	19	12	35	1.90
1118573--1118752	66	2.7	66	91	4	285	30	20	13	35	1.92
1118722--1118860	37	3.8	37	86	6	180	41	18	9	30	1.82
1119176--1119223	23	2.2	22	85	10	64	37	2	8	52	1.44
1120649--1120675	2	13.5	2	100	0	54	48	0	0	51	1.00
1120752--1120843	8	10.8	8	73	17	53	14	8	1	76	1.08
1120760--1120805	23	2.0	24	86	4	67	10	10	0	78	0.97
1120896--1120946	16	3.1	16	81	13	59	19	7	1	70	1.21
1121945--1122001	2	29.5	2	92	7	100	49	0	0	50	1.00
1122911--1122940	16	1.9	16	93	6	53	60	10	6	23	1.52
1124749--1124779	16	1.9	16	93	0	53	61	22	9	6	1.50
1124852--1124920	16	4.3	16	84	0	84	60	20	7	11	1.54
1124849--1124913	32	2.0	32	87	0	94	60	21	9	9	1.55
1125578--1125646	24	2.9	24	87	8	104	57	17	8	15	1.62
1125598--1125653	14	4.3	14	73	17	66	53	19	12	14	1.72
1126591--1126641	2	25.5	2	100	0	102	49	0	0	50	1.00
1127062--1127130	2	34.5	2	100	0	138	49	0	0	50	1.00
1128170--1128283	8	12.9	8	73	22	52	58	1	4	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128171--1128289	19	6.3	19	78	14	129	57	1	5	35	1.30
1128251--1128275	2	12.5	2	100	0	50	52	0	0	48	1.00
1130457--1130499	2	21.5	2	92	0	68	46	0	2	51	1.13
1131751--1131801	23	2.3	22	80	6	57	15	43	1	39	1.58
1131762--1131809	23	2.1	23	100	0	96	12	39	0	47	1.41
1132054--1132083	15	1.9	16	93	6	53	26	23	20	30	1.98
1132196--1132254	3	20.0	3	89	10	95	69	0	0	30	0.89
1133248--1133287	21	1.9	21	85	10	55	40	20	15	25	1.90
1138300--1138335	18	2.1	18	89	5	56	58	0	0	41	0.98
1138938--1138963	13	2.0	13	100	0	52	46	23	15	15	1.83
1143508--1143532	13	1.9	13	100	0	50	48	24	16	12	1.79
1145380--1145437	14	4.4	14	75	20	70	12	17	15	55	1.70
1145396--1145448	25	2.1	25	89	6	81	13	11	15	60	1.59
1163008--1163117	40	2.7	40	79	14	109	23	29	20	27	1.99
1163050--1163144	20	4.7	20	80	5	118	22	28	22	27	1.99
1163050--1163144	42	2.3	40	85	3	118	22	28	22	27	1.99
1163321--1163362	22	1.9	22	90	0	66	23	38	16	21	1.93
1163750--1163817	20	3.5	20	85	2	93	11	14	23	50	1.76
1163958--1164012	25	2.2	26	78	15	62	18	10	18	52	1.73
1165221--1165265	20	2.2	20	88	0	63	37	26	17	17	1.93
1165308--1165354	20	2.5	19	82	6	60	17	19	25	38	1.92
1167342--1167378	14	2.6	14	95	0	65	43	0	10	45	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1167517--1167555	20	2.0	20	94	0	69	51	20	17	10	1.74
1167600--1167876	20	14.8	20	74	13	221	24	18	21	35	1.95
1167558--1167876	74	4.3	74	78	3	302	24	18	21	35	1.95
1167548--1167868	54	5.9	53	73	10	227	24	18	21	35	1.96
1167564--1167700	34	3.9	34	76	11	139	22	21	20	35	1.96
1167600--1167814	94	2.3	94	85	1	288	24	19	21	34	1.96
1167847--1168116	140	1.9	140	94	0	477	43	14	12	29	1.83
1168171--1168211	18	2.3	18	86	0	64	17	2	29	51	1.58
1170247--1170273	14	1.9	14	100	0	54	7	18	29	44	1.77
1170248--1170280	14	2.5	13	90	9	50	6	21	24	48	1.72

Tables:   1   2   3   4   5   6   7