Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008375.1 Hibiscus syriacus cultivar Beakdansim tig00111132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1210889

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 744 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1171359--1171434
20
3.8
20
91
0
125
28
17
27
26
1.97
1171355--1171434
40
2.0
40
95
0
142
28
17
27
26
1.98
1171423--1171473
20
2.5
20
93
0
93
23
19
17
39
1.92
1171470--1171515
21
2.2
21
88
0
65
34
19
26
19
1.96
1175662--1175705
19
2.4
19
88
3
63
72
0
6
20
1.07
1178131--1178180
19
2.6
19
84
9
66
72
0
8
20
1.10
1178134--1178179
14
3.2
14
84
3
65
73
0
6
19
1.04
1178134--1178180
5
9.6
5
86
13
53
74
0
6
19
1.03
1183557--1183591
18
1.9
18
100
0
70
17
22
34
25
1.96
1187996--1188030
18
1.9
18
94
0
61
20
22
31
25
1.98
1188306--1188333
12
2.3
12
100
0
56
50
0
25
25
1.50
1190432--1190473
17
2.4
18
80
11
52
76
0
2
21
0.90
1193236--1193340
29
3.6
29
64
21
74
46
7
8
37
1.63
1193253--1193365
59
1.9
59
81
3
138
50
8
7
32
1.63
1193648--1193712
27
2.3
28
92
5
105
64
10
1
23
1.33
1200355--1200396
2
21.0
2
100
0
84
50
0
0
50
1.00
1200663--1200728
31
2.1
31
100
0
132
31
6
27
34
1.81
1205512--1205551
21
1.9
21
100
0
80
75
5
5
15
1.15
1206343--1206384
21
2.0
21
90
0
66
7
11
30
50
1.66
1206762--1206828
30
2.3
30
97
2
127
8
31
19
40
1.82
1206937--1206994
11
5.5
11
73
20
52
70
1
0
27
0.97
1207030--1207373
36
9.6
35
79
11
349
43
8
3
44
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1207393--1207426
2
17.0
2
100
0
68
50
0
0
50
1.00
1209979--1210077
50
2.0
50
88
4
146
20
15
16
48
1.81

Tables:   1   2   3   4   5   6   7

The End!