genome.fa.s8375.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008375.1 Hibiscus syriacus cultivar Beakdansim tig00111132_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1210889

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511656--511977	106	3.0	106	88	0	446	23	18	22	34	1.96
512555--512624	32	2.2	32	82	5	79	34	20	15	30	1.93
513823--514236	207	2.0	207	100	0	828	32	21	14	31	1.93
515934--516042	8	14.1	8	70	18	52	68	0	1	29	1.00
515915--515970	25	2.2	26	83	3	69	76	0	5	17	0.96
515936--516045	49	2.2	53	85	9	149	67	0	1	30	1.01
515936--516086	49	3.0	49	80	9	146	64	1	1	31	1.13
515975--516098	47	2.8	44	77	12	135	63	2	1	32	1.17
516060--516123	24	2.8	24	83	4	78	67	1	3	28	1.15
518976--519149	87	2.0	87	100	0	348	43	16	16	24	1.87
523457--523534	17	4.6	17	98	0	147	17	21	29	30	1.97
533933--533967	12	2.8	12	91	8	52	22	0	5	71	1.07
534169--534202	16	2.1	17	88	5	52	14	8	2	73	1.19
534587--534629	21	2.0	21	95	0	77	27	18	32	20	1.96
538579--538618	21	1.9	21	100	0	80	25	25	17	32	1.97
540618--540667	20	2.5	20	86	0	73	46	16	8	30	1.75
545830--545912	22	3.8	22	98	0	157	20	42	26	10	1.85
551787--551823	19	1.9	19	88	0	56	24	35	27	13	1.93
551787--551829	19	2.3	19	84	8	52	20	32	32	13	1.92
554408--554467	22	2.8	21	90	9	95	21	40	23	15	1.91
557302--557344	19	2.3	19	91	0	68	46	20	4	27	1.71
557307--557353	19	2.6	18	80	12	53	48	27	4	19	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571660--571695	18	1.9	19	88	5	56	44	30	0	25	1.54
577712--577755	20	2.2	20	95	0	79	34	25	20	20	1.97
577760--577879	40	3.0	40	70	10	100	30	20	12	35	1.90
577995--578045	22	2.3	22	96	0	93	27	37	7	27	1.84
578836--578889	24	2.2	24	90	0	81	25	18	14	40	1.89
580354--580428	21	3.6	21	68	12	55	30	37	12	20	1.89
580445--580494	21	2.4	21	79	0	55	34	32	12	22	1.90
582066--582120	20	2.7	21	83	8	69	14	12	21	50	1.76
582448--582505	22	2.6	22	88	0	89	18	18	43	18	1.89
582579--582614	19	1.9	18	88	5	54	33	5	19	41	1.75
582695--582753	21	2.8	21	100	0	118	37	16	25	20	1.93
583576--583609	13	2.6	13	100	0	68	32	17	0	50	1.47
583796--583932	59	2.3	60	76	9	145	33	13	5	48	1.64
583998--584055	22	2.7	22	94	2	100	48	5	5	41	1.48
587176--587230	22	2.5	22	93	0	101	27	18	27	27	1.98
588374--588464	30	3.0	30	82	6	110	25	20	20	32	1.97
591711--591774	2	32.0	2	100	0	128	50	0	0	50	1.00
594853--594879	14	1.9	14	100	0	54	40	22	0	37	1.54
595701--595785	40	2.1	41	97	2	163	34	12	21	31	1.91
597783--597827	21	2.1	21	83	0	54	31	26	24	17	1.97
599494--599562	25	2.8	25	100	0	138	17	28	26	27	1.97
602952--602996	21	2.1	21	87	0	63	31	28	24	15	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604820--604864	23	2.0	23	81	0	54	22	26	24	26	2.00
608780--608942	85	1.9	85	82	5	204	29	16	20	33	1.95
608924--608960	13	2.8	13	95	0	65	32	5	21	40	1.76
614170--614220	2	27.0	2	80	11	63	50	0	0	49	1.00
614189--614236	11	4.4	11	81	5	53	39	0	0	60	0.97
614358--614387	2	15.5	2	93	6	53	50	0	0	50	1.00
614456--614495	17	2.2	19	86	8	57	65	2	0	32	1.06
614531--614575	13	3.3	13	78	9	54	62	2	2	33	1.20
615906--615977	3	25.0	3	75	8	69	59	1	0	38	1.06
615896--615950	23	2.3	24	87	3	76	54	1	0	43	1.10
615906--615986	25	3.3	25	81	6	78	61	1	0	37	1.04
615907--615993	23	3.9	22	75	16	54	63	1	0	35	1.02
616348--616665	123	2.6	122	86	5	455	26	20	13	40	1.89
617062--617115	22	2.5	22	90	0	81	38	11	14	35	1.82
617495--617628	54	2.5	54	86	0	187	26	17	13	42	1.86
617935--617997	27	2.3	27	91	0	108	52	14	15	17	1.75
618524--618697	75	2.3	75	85	0	240	28	22	15	33	1.95
619642--619682	5	8.6	5	84	10	50	0	29	0	70	0.87
619641--619690	20	2.6	19	87	9	75	0	24	0	76	0.80
622188--622279	6	14.0	6	71	20	53	59	6	16	17	1.57
622182--622258	26	3.0	26	78	19	81	61	5	14	19	1.52
622242--622281	13	2.9	14	86	13	57	57	10	17	15	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624822--624906	33	2.8	31	74	15	88	64	1	1	32	1.08
624851--624906	26	2.2	26	84	9	71	64	0	1	33	1.04
624874--624945	27	2.8	25	80	15	85	63	5	1	29	1.25
626272--626362	3	32.0	3	78	10	102	63	0	0	36	0.94
626271--626353	32	2.6	31	84	3	103	63	0	0	36	0.94
626305--626341	10	3.5	10	92	7	56	75	0	0	24	0.80
628168--628204	2	18.5	2	100	0	74	51	0	0	48	1.00
638953--639007	29	1.9	28	81	3	65	38	23	9	29	1.85
639007--639039	7	4.7	7	100	0	66	24	30	30	15	1.95
639036--639089	18	3.0	18	88	0	90	18	16	46	18	1.85
646171--646225	29	1.9	28	81	3	65	38	23	9	29	1.85
646269--646310	13	3.3	13	83	6	59	16	21	42	19	1.89
646289--646341	18	2.9	18	94	0	97	16	16	47	18	1.83
646345--646388	10	4.6	10	86	8	65	34	29	22	13	1.93
646345--646389	19	2.4	19	96	0	81	33	28	22	15	1.95
665116--665193	21	3.8	20	74	6	57	37	11	19	32	1.87
667711--667735	8	3.1	8	100	0	50	52	0	12	36	1.39
668810--669658	349	2.4	349	92	1	1395	41	12	16	29	1.85
670795--670838	2	22.0	2	100	0	88	50	0	0	50	1.00
673098--673137	6	6.7	6	94	0	71	32	12	0	55	1.38
673850--674014	76	2.2	75	87	7	228	42	13	11	32	1.80
674053--674726	201	3.4	198	83	5	774	38	14	12	34	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676854--676997	55	2.6	55	89	3	220	28	23	21	26	1.99
681092--681233	54	2.6	55	90	5	218	30	23	19	26	1.98
684010--684054	16	2.8	16	89	0	63	68	0	0	31	0.89
684047--684077	13	2.4	13	100	0	62	48	6	0	45	1.28
685186--686230	226	4.7	226	86	4	1425	38	13	15	32	1.86
685185--686166	440	2.2	445	87	4	1406	38	12	15	32	1.86
689650--689699	22	2.3	22	85	0	64	34	24	26	16	1.95
692502--692695	96	2.0	96	88	0	289	41	17	12	28	1.85
694613--694670	22	2.6	23	78	10	57	34	20	22	22	1.97
696488--696539	2	26.0	2	100	0	104	50	0	0	50	1.00
697701--697738	20	1.9	20	94	0	67	36	10	31	21	1.87
697895--697970	39	2.0	37	82	7	91	47	3	1	47	1.29
697982--698165	81	2.3	81	92	1	298	38	8	9	43	1.68
700333--700379	19	2.5	18	75	21	51	65	0	2	31	1.04
701229--701303	23	3.2	24	79	5	91	46	9	12	32	1.73
704885--704946	31	2.0	31	93	6	108	22	25	16	35	1.94
706877--706954	31	2.5	31	80	0	93	38	11	23	26	1.89
714971--715025	25	2.2	25	96	0	101	32	14	30	21	1.93
717503--717937	59	7.4	59	72	10	298	37	10	22	29	1.87
717504--717923	118	3.6	116	85	5	479	36	10	22	29	1.88
718384--718430	21	2.2	21	88	0	67	23	21	27	27	1.99
723683--723725	15	2.9	14	82	6	50	81	0	11	6	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
724356--724388	2	16.5	2	100	0	66	51	0	0	48	1.00
725381--725413	14	2.4	14	90	5	50	39	18	18	24	1.92
725390--725434	20	2.2	20	80	11	56	44	22	11	22	1.84
725455--725488	17	2.0	17	88	0	50	29	17	29	23	1.97
726688--726725	13	2.9	13	96	0	67	18	47	21	13	1.82
726702--726746	18	2.6	18	92	3	74	24	51	15	8	1.72
726702--726754	17	3.1	17	88	2	79	22	47	18	11	1.81
733893--733955	23	2.8	23	90	2	83	17	46	23	12	1.83
733926--733959	17	2.0	17	100	0	68	17	47	23	11	1.81
733970--734036	29	2.3	29	84	2	80	22	10	26	40	1.86

Tables:   1   2   3   4   5   6   7