Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008424.1 Hibiscus syriacus cultivar Beakdansim tig00111207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4198033

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1819 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4141203--4141250
20
2.7
18
81
15
55
2
16
4
77
1.03
4145232--4145281
12
4.2
12
80
7
57
2
16
4
78
1.00
4145234--4145289
15
3.7
15
78
17
55
1
17
5
75
1.09
4145239--4145286
20
2.7
18
81
15
55
2
16
4
77
1.03
4149269--4149318
12
4.2
12
80
7
57
2
16
4
78
1.00
4149271--4149326
15
3.7
15
78
17
55
1
17
5
75
1.09
4149276--4149323
20
2.7
18
81
15
55
2
16
4
77
1.03
4150814--4150856
20
2.2
20
91
4
70
44
4
13
37
1.65
4151156--4151205
24
2.1
24
81
7
57
28
8
30
34
1.86
4151774--4151833
30
2.0
31
83
3
77
55
10
8
26
1.61
4154957--4155007
19
2.6
20
90
3
77
43
5
13
37
1.69
4163845--4163895
19
2.7
19
85
14
70
23
15
0
60
1.35
4166717--4166755
9
4.2
9
86
3
51
43
41
0
15
1.46
4171884--4171920
15
2.6
14
87
8
56
72
10
10
5
1.25
4171889--4171920
15
2.1
15
100
0
64
75
6
12
6
1.19
4181633--4181689
22
2.5
22
72
13
53
75
3
17
3
1.09
4181650--4181692
14
3.1
14
76
3
52
76
2
18
2
1.00
4191867--4191908
19
2.2
19
87
8
59
26
11
0
61
1.30
4195129--4195171
20
2.2
20
83
8
52
2
16
0
81
0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!