genome.fa.s8424.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008424.1 Hibiscus syriacus cultivar Beakdansim tig00111207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4198033

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  4  of  16  ( 1819 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737422--738184	113	6.8	113	92	3	1222	26	20	15	37	1.92
738590--738644	22	2.5	22	87	0	83	36	14	14	34	1.87
741123--741346	114	2.0	114	92	1	378	30	21	15	32	1.94
743496--743553	9	6.6	9	75	15	50	3	18	0	77	0.91
743496--743553	16	3.8	16	75	11	52	3	18	0	77	0.91
747171--747222	14	3.8	14	84	2	61	51	9	11	26	1.68
750951--750996	3	16.0	3	86	8	60	65	0	0	34	0.93
750934--750976	18	2.4	17	81	11	50	51	0	2	46	1.13
750968--750999	8	3.9	8	95	4	55	71	0	0	28	0.86
770685--770722	19	2.0	20	89	5	60	44	15	13	26	1.83
773400--773711	62	4.9	62	81	6	345	34	14	8	42	1.75
773400--773739	130	2.6	130	88	2	479	34	15	7	42	1.76
784166--784224	26	2.2	26	90	3	91	32	11	10	45	1.74
784175--784225	26	2.0	26	100	0	102	31	13	11	43	1.80
784181--784248	26	2.6	26	85	2	82	33	13	8	44	1.74
788665--788724	27	2.2	27	84	0	75	31	13	10	45	1.76
788673--788725	27	2.0	27	88	0	79	30	15	11	43	1.81
799552--799587	19	1.9	18	88	5	54	52	13	11	22	1.72
803662--803716	28	1.9	29	85	10	78	7	1	9	81	0.93
803678--803718	17	2.5	16	84	7	55	7	2	7	82	0.91
805700--805760	22	2.8	22	97	0	113	14	11	9	63	1.51
807618--807823	38	5.4	38	72	5	130	30	14	22	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
807469--807726	76	3.4	76	74	3	196	31	17	20	31	1.95
807569--807825	114	2.3	114	78	5	270	30	14	22	32	1.94
807617--807828	114	1.9	114	82	2	273	30	14	23	31	1.94
807626--807870	114	2.1	114	79	4	253	31	16	23	29	1.96
828565--828723	81	2.0	81	96	0	291	38	13	15	32	1.86
834767--834838	17	4.2	17	72	10	56	38	6	15	38	1.74
836659--836767	28	3.9	28	95	0	191	39	27	18	14	1.90
838595--838619	2	12.5	2	100	0	50	52	0	0	48	1.00
839031--839139	58	1.9	57	90	1	173	33	19	7	39	1.79
839329--839464	60	2.2	60	81	3	148	38	5	18	38	1.73
849436--849460	8	3.1	8	100	0	50	0	12	0	88	0.53
849951--850010	30	2.0	30	100	0	120	36	23	10	30	1.87
850618--850658	20	2.0	20	100	0	82	14	9	29	46	1.77
854644--854694	10	4.9	10	77	15	50	78	0	7	13	0.96
854644--854682	5	7.8	5	91	0	51	79	0	7	12	0.93
854649--854689	20	2.0	20	90	0	64	78	0	7	14	0.96
854781--854868	26	3.5	25	72	25	78	39	7	5	46	1.57
858634--858681	18	2.6	18	90	3	69	70	2	2	25	1.09
861275--861329	21	2.7	19	86	10	74	78	0	1	20	0.85
861275--861387	5	21.4	5	72	16	68	70	1	4	23	1.14
864450--864494	17	2.8	16	86	6	56	51	2	2	44	1.26
864514--864557	23	2.0	23	90	4	72	47	9	9	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864537--864575	16	2.4	16	91	0	60	43	10	5	41	1.61
864605--864656	11	4.5	11	86	9	59	46	3	1	48	1.31
864611--864678	18	3.3	20	72	22	59	45	4	2	47	1.38
864609--864655	24	2.0	24	91	0	76	46	4	2	46	1.34
864699--864730	14	2.2	15	94	5	57	53	6	0	40	1.26
864699--864743	21	2.1	22	91	4	74	53	6	0	40	1.27
864619--864789	59	2.9	58	79	9	170	47	8	1	42	1.45
864759--864807	15	3.1	15	91	5	71	59	10	0	30	1.31
864882--864929	23	2.1	23	84	3	62	54	8	6	31	1.55
864970--865028	14	4.7	14	72	20	51	42	11	5	40	1.64
864986--865063	21	4.0	21	69	24	73	41	6	5	47	1.51
864972--865049	35	2.2	35	100	0	156	41	8	5	44	1.58
865151--865182	16	1.9	17	93	6	57	50	9	3	37	1.51
865179--865212	15	2.3	15	94	0	59	64	5	0	29	1.17
865220--865302	21	3.7	21	70	19	60	49	7	2	40	1.43
865245--865272	13	2.2	13	100	0	56	39	7	7	46	1.59
865376--865418	22	1.9	23	95	4	79	46	9	6	37	1.63
865398--865438	16	2.6	16	92	0	64	41	14	2	41	1.59
865531--865567	12	2.7	14	88	12	51	62	8	0	29	1.24
868674--868732	20	3.4	17	78	15	66	49	10	0	40	1.37
869123--869223	45	2.3	42	86	5	139	50	10	0	37	1.44
869199--869252	28	1.9	28	96	0	99	55	14	0	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
869194--869259	28	2.4	28	85	10	98	54	12	0	33	1.37
869229--869277	21	2.3	21	82	3	62	51	16	0	32	1.45
869494--869552	24	2.4	25	80	11	77	35	15	23	25	1.94
871371--871403	11	3.0	11	86	13	50	54	0	3	42	1.15
871384--871418	18	1.9	18	88	0	52	60	2	0	37	1.12
883692--883798	49	2.2	49	81	0	115	24	26	32	16	1.96
884572--884596	12	2.1	12	100	0	50	32	0	0	68	0.90
887789--887831	20	2.2	20	87	8	61	53	4	16	25	1.62
888847--888888	21	2.0	21	100	0	84	33	9	4	52	1.55
889231--889271	17	2.4	17	79	0	55	21	19	4	53	1.63
889549--889700	19	7.7	19	67	13	74	37	17	17	26	1.93
889544--889700	40	3.9	40	80	6	174	38	17	17	26	1.91
889543--889700	80	2.0	80	84	0	208	39	17	17	26	1.91
905069--905104	17	2.1	17	89	0	54	63	2	0	33	1.08
910701--910727	7	3.9	7	100	0	54	88	0	0	11	0.50
916633--916669	3	12.7	3	94	5	67	64	0	0	35	0.94
916867--917307	137	3.2	136	85	5	559	26	17	21	33	1.96
917204--917368	56	2.9	54	79	5	177	30	13	23	32	1.94
921112--921659	54	10.1	54	85	3	626	32	16	18	32	1.93
925544--925592	23	2.1	23	85	7	64	46	2	2	48	1.25
930267--930296	2	14.5	2	93	6	51	50	3	0	46	1.18
931088--931136	23	2.1	23	85	7	64	48	0	2	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935732--935885	75	2.0	76	96	3	285	40	3	22	32	1.72
936453--936516	15	4.3	15	89	0	101	29	6	15	48	1.70
936568--937056	54	9.1	54	85	5	586	33	15	18	32	1.92
936568--937118	108	5.1	108	82	6	588	33	15	18	32	1.92
936591--937118	162	3.3	160	79	9	533	34	15	17	32	1.92
950370--950412	12	3.7	12	76	17	54	58	0	2	39	1.11
967447--967488	19	2.2	20	86	4	59	33	0	0	66	0.92
973830--973889	30	2.0	31	86	3	86	28	8	10	53	1.63
974787--974833	19	2.4	19	89	3	67	34	14	6	44	1.71
977123--977184	30	2.0	31	87	3	90	27	8	9	54	1.61
978094--978144	20	2.6	20	90	3	77	35	15	5	43	1.71
978889--978946	23	2.6	23	75	8	57	51	17	18	12	1.75
978953--978984	8	4.0	8	95	0	55	87	0	3	9	0.64
979090--979114	4	6.2	4	100	0	50	28	0	0	72	0.86
986064--986101	16	2.4	16	100	0	76	23	18	26	31	1.97
989666--989708	21	2.0	21	82	8	52	30	6	18	44	1.76
990913--990958	21	2.2	21	88	3	67	30	17	21	30	1.96
990834--991037	94	2.2	94	85	1	266	35	15	22	26	1.94
991377--991532	55	2.8	55	87	4	226	37	9	17	35	1.83
991382--991552	55	3.1	55	83	6	195	36	8	19	35	1.83
991717--991904	68	2.8	69	88	4	274	30	16	23	29	1.96
991854--992015	81	2.0	81	92	2	272	35	11	24	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991869--992095	81	2.8	82	84	2	262	38	9	22	28	1.86
995703--995737	17	2.1	16	89	5	52	40	8	28	22	1.84
996172--996368	95	2.1	95	86	1	279	34	13	24	26	1.93
996173--996393	95	2.3	95	82	4	241	33	13	25	26	1.93
996751--996878	54	2.3	55	86	1	177	32	10	21	35	1.89
997052--997239	68	2.8	68	88	1	270	29	13	25	30	1.94
997193--997362	81	2.1	81	93	0	286	34	12	23	30	1.91
997193--997401	81	2.6	81	88	1	276	33	11	23	31	1.90
997351--997537	68	2.8	68	84	1	241	29	13	25	31	1.94
997487--997698	80	2.6	81	82	5	268	37	11	21	29	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16