genome.fa.s8460.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008460.1 Hibiscus syriacus cultivar Beakdansim tig00111273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2854393

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  1  of  15  ( 1744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1219--1308	35	2.5	36	83	8	112	47	4	2	45	1.35
1289--1324	2	18.5	2	94	5	65	50	0	0	50	1.00
824--1308	38	13.4	36	72	19	236	44	5	2	46	1.41
2789--2861	33	2.2	33	82	4	85	12	36	26	24	1.91
2843--2875	14	2.4	14	94	0	57	6	30	39	24	1.79
3297--3352	29	1.9	29	92	0	94	14	37	28	19	1.91
3360--3446	10	8.1	10	68	14	57	10	37	27	24	1.88
3356--3446	33	2.8	33	87	0	137	9	38	27	24	1.87
3586--3646	31	2.0	30	83	3	77	39	13	3	44	1.60
3586--3648	30	2.0	30	81	6	72	39	14	3	42	1.61
12013--12076	23	2.8	23	90	4	94	26	21	28	23	1.99
17623--17672	23	2.2	23	100	0	100	22	26	22	30	1.99
17623--17680	23	2.5	23	94	0	89	22	24	20	32	1.98
21174--21211	20	1.9	20	100	0	76	31	15	23	28	1.96
22769--22814	23	2.0	23	82	0	56	17	19	26	36	1.94
24707--24753	22	2.1	23	80	8	60	10	23	31	34	1.89
31669--31778	57	1.9	56	88	1	166	25	19	17	38	1.93
33442--33516	37	2.0	37	94	0	132	40	6	14	38	1.73
35386--35516	64	2.0	65	88	1	192	22	19	17	40	1.91
43621--43645	2	12.5	2	100	0	50	52	0	0	48	1.00
43984--44047	22	3.0	22	75	11	60	25	4	6	64	1.37
45901--46196	80	3.7	80	90	1	443	31	23	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47835--47868	18	1.9	18	88	5	52	29	20	0	50	1.49
48293--48339	17	2.6	18	83	10	60	34	17	6	42	1.74
49232--49280	22	2.2	23	85	10	66	48	28	2	20	1.60
52029--52069	9	4.7	9	77	17	50	39	4	0	56	1.21
53441--53474	2	17.0	2	100	0	68	50	0	0	50	1.00
54345--54378	16	2.1	17	94	5	61	38	23	20	17	1.93
55986--56170	29	6.3	29	88	6	284	39	21	3	35	1.72
63438--63630	29	6.6	29	86	3	262	39	20	3	36	1.69
63667--63726	19	3.2	19	82	0	75	28	26	25	20	1.99
64423--64447	10	2.5	10	100	0	50	36	36	0	28	1.58
66789--66840	2	26.0	2	100	0	104	50	0	0	50	1.00
67094--67381	60	4.8	60	86	0	389	25	18	18	37	1.93
67107--67381	119	2.3	119	87	3	399	25	18	18	36	1.94
69052--69086	2	17.5	2	100	0	70	48	0	0	51	1.00
71685--71931	122	2.0	122	100	0	494	21	3	21	54	1.58
74386--74443	24	2.4	25	88	5	84	37	5	3	53	1.40
76659--76688	9	3.3	9	95	0	51	40	23	16	20	1.91
76920--77889	487	2.0	486	88	3	1450	34	11	15	39	1.83
79369--79399	12	2.7	12	95	5	55	29	41	0	29	1.56
83672--83717	19	2.4	19	100	0	92	21	32	26	19	1.97
84101--84131	12	2.7	12	95	5	55	29	41	0	29	1.56
93138--93197	31	1.9	31	93	0	102	41	6	6	45	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93664--93716	19	2.8	20	75	16	58	64	0	0	35	0.94
93670--93731	18	3.2	20	78	19	62	61	0	1	37	1.06
93726--93884	63	2.6	63	87	9	240	56	1	0	41	1.10
93776--93881	12	8.5	13	69	16	73	59	1	0	38	1.08
93746--93830	40	2.2	37	85	10	109	54	1	0	44	1.07
93783--93854	23	2.9	27	82	15	84	55	1	0	43	1.08
99492--99530	20	2.0	20	94	0	69	43	15	7	33	1.75
103135--103178	23	1.9	23	85	0	61	27	22	9	40	1.84
103222--103280	20	2.8	21	85	12	77	42	11	10	35	1.76
104569--104610	20	2.1	20	86	0	57	52	0	0	47	1.00
104579--104652	26	3.0	25	74	16	64	52	1	0	45	1.09
104596--104639	22	2.0	22	86	8	63	54	0	0	45	0.99
107931--108182	137	1.8	137	91	3	418	23	21	22	32	1.98
108068--108398	125	2.8	114	83	10	446	22	22	23	32	1.98
108308--108563	139	1.8	138	88	3	388	23	21	21	32	1.98
108696--108758	23	2.7	23	95	0	108	49	0	17	33	1.47
108699--108815	23	5.3	23	71	13	104	41	0	21	36	1.59
108714--108843	63	2.0	64	91	1	208	39	1	22	36	1.64
108909--108939	14	2.2	14	100	0	62	25	0	16	58	1.38
109594--109645	21	2.5	21	81	12	70	23	26	32	17	1.96
110249--110318	18	3.8	19	76	14	67	55	5	0	38	1.24
110503--110871	36	10.4	35	71	16	151	46	2	5	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110625--110725	30	3.2	29	79	10	103	45	1	5	46	1.38
110571--110799	71	3.2	71	80	14	242	44	2	6	46	1.42
110765--110831	30	2.3	30	86	2	91	49	2	2	44	1.32
110729--110863	65	2.1	64	84	4	173	48	2	3	45	1.32
110505--110864	139	2.6	142	78	12	368	46	2	5	44	1.41
112137--112239	17	6.1	16	80	15	59	19	1	2	75	1.02
112142--112237	12	8.3	11	73	26	67	19	2	2	76	1.00
112145--112239	21	4.2	24	72	20	80	21	2	2	74	1.02
112150--112239	18	5.3	17	78	14	80	21	1	2	75	0.97
112174--112237	6	11.2	6	72	14	55	20	1	1	76	0.95
112162--112236	15	4.8	15	80	13	80	21	1	1	76	0.94
112161--112260	27	3.7	26	78	14	78	23	4	2	71	1.14
112174--112233	9	7.1	9	75	19	58	20	1	1	76	0.96
113313--113342	15	2.0	15	93	0	51	6	6	3	83	0.90
117355--118199	165	5.1	163	86	4	1113	31	24	20	24	1.98
117355--118146	329	2.4	329	88	3	1180	30	24	20	24	1.99
118775--119151	36	10.6	37	73	16	248	46	3	5	44	1.44
118898--119037	66	2.2	65	87	8	205	45	2	6	46	1.41
118899--118999	30	3.2	29	84	10	121	45	1	5	46	1.38
118864--119151	102	2.8	102	81	10	315	46	3	5	45	1.42
120503--120552	25	2.0	25	88	7	75	22	6	0	72	1.07
120503--120624	25	4.8	24	72	21	74	18	6	1	72	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120556--120608	16	3.2	16	82	15	56	15	3	3	77	1.06
120561--120634	12	6.2	11	74	22	53	17	5	1	75	1.06
120561--120634	21	3.7	21	73	20	61	17	5	1	75	1.06
120646--120692	3	16.0	3	95	4	87	34	0	0	65	0.93
122037--122094	15	3.8	15	76	10	55	56	0	0	43	0.99
122039--122095	17	3.5	17	76	9	64	57	0	0	42	0.98
122161--122187	10	2.7	10	100	0	54	29	0	22	48	1.51
123041--123147	34	3.1	33	78	14	85	34	0	3	61	1.14
123074--123152	34	2.4	34	85	8	101	37	0	1	60	1.05
123291--123344	17	3.2	17	72	0	54	31	0	3	64	1.11
124869--124916	21	2.3	21	85	0	60	25	39	12	22	1.89
124926--124993	21	3.2	21	91	4	102	19	33	25	22	1.97
125527--125620	28	3.2	27	76	19	89	55	4	2	38	1.31
125530--125601	34	2.1	34	89	2	110	61	4	0	34	1.16
125564--125629	27	2.4	27	85	5	80	54	4	3	37	1.36
126008--126598	128	4.6	128	98	0	1137	32	19	25	22	1.97
128766--128803	13	3.0	13	88	3	60	44	0	0	55	0.99
131374--131519	31	4.7	31	93	0	229	30	16	6	46	1.73
134494--134536	13	3.5	13	84	12	63	23	27	6	41	1.80
134494--134532	11	3.4	11	92	7	60	23	25	7	43	1.80
134318--134728	216	1.9	216	97	0	777	34	19	10	36	1.86
152585--152628	22	2.0	22	82	8	54	52	9	6	31	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153131--153351	49	4.5	49	85	2	291	29	19	12	38	1.88
163739--163854	35	3.2	36	86	4	164	42	18	5	34	1.72
163789--163852	20	3.4	20	66	29	59	45	18	4	31	1.70
170469--170522	21	2.5	21	82	8	56	31	12	25	29	1.93
171598--171643	20	2.3	20	96	0	83	43	4	19	32	1.71
174664--174769	50	2.1	50	89	1	160	30	14	27	28	1.95
175977--176025	22	2.1	24	85	7	66	32	0	24	42	1.55
187111--187150	20	2.0	20	90	0	62	20	15	20	45	1.86
187201--187241	12	3.1	13	80	19	57	46	14	17	21	1.84
189277--189316	21	1.9	21	94	0	71	30	15	7	47	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15