genome.fa.s8460.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008460.1 Hibiscus syriacus cultivar Beakdansim tig00111273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2854393

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2734536--2734574	17	2.2	18	86	4	53	7	17	7	66	1.40
2734796--2734902	45	2.3	46	85	7	139	28	19	20	30	1.97
2737398--2737445	24	2.0	24	95	0	87	33	18	12	35	1.89
2737571--2737631	25	2.4	25	100	0	122	31	8	31	29	1.86
2738020--2738245	117	1.9	118	94	2	400	36	5	4	53	1.45
2738315--2738344	2	15.0	2	100	0	60	50	0	0	50	1.00
2739257--2739288	6	5.3	6	100	0	64	50	0	50	0	1.00
2742564--2742598	2	17.5	2	100	0	70	51	0	0	48	1.00
2743637--2743700	28	2.3	28	100	0	128	42	4	26	26	1.75
2750941--2750985	23	2.0	23	90	0	72	24	26	26	22	2.00
2750953--2751260	147	2.1	144	91	6	489	33	21	18	26	1.96
2752746--2752786	21	2.0	21	85	0	55	17	24	29	29	1.97
2756034--2756078	23	2.0	23	90	0	72	24	26	26	22	2.00
2756046--2756360	149	2.1	149	95	2	562	33	20	18	26	1.96
2757141--2757182	22	2.0	22	81	13	52	35	21	0	42	1.53
2757850--2757890	21	2.0	21	85	0	55	17	24	29	29	1.97
2759147--2759302	31	5.0	31	90	1	233	21	19	21	38	1.94
2759987--2760040	22	2.5	22	90	0	90	22	20	14	42	1.88
2759966--2760027	32	1.9	32	86	0	88	24	19	14	41	1.88
2761473--2761543	32	2.2	32	80	2	81	14	21	32	32	1.93
2763152--2763274	62	2.0	62	83	3	158	34	26	8	30	1.86
2775096--2775140	18	2.6	18	89	6	67	31	33	2	33	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2782979--2783007	14	2.1	14	100	0	58	6	65	13	13	1.45
2788166--2788239	34	2.2	34	95	4	132	39	9	13	37	1.77
2788581--2788657	24	3.6	22	75	20	67	29	19	25	24	1.98
2789640--2789696	23	2.5	23	82	0	78	19	28	24	28	1.98
2792966--2793042	24	3.6	22	75	20	67	29	19	25	24	1.98
2794002--2794062	23	2.7	23	81	0	86	16	26	27	29	1.97
2798733--2798892	79	2.1	77	86	4	223	48	8	13	30	1.72
2799645--2799730	43	2.0	43	95	0	154	60	3	4	31	1.34
2799747--2799781	17	1.9	19	88	11	56	42	2	8	45	1.49
2801992--2802089	47	2.1	44	88	7	142	38	10	13	37	1.78
2804436--2804485	25	2.0	26	84	4	66	24	2	18	56	1.52
2806988--2807104	21	5.4	21	70	15	78	43	1	4	50	1.31
2806982--2807110	19	7.3	19	70	22	86	39	1	6	52	1.36
2807062--2807158	21	4.5	21	74	17	74	40	2	6	51	1.39
2807144--2807193	14	3.6	14	76	15	50	24	2	0	74	0.93
2809151--2809224	20	3.7	20	82	7	87	31	22	25	20	1.98
2809245--2809342	43	2.3	43	86	8	130	22	18	36	22	1.95
2809245--2809342	22	4.6	21	75	14	94	22	18	36	22	1.95
2809883--2809923	10	4.2	10	81	6	57	41	19	0	39	1.52
2810618--2810661	21	2.1	21	86	0	61	31	13	45	9	1.75
2817982--2818038	21	2.7	21	91	0	96	24	22	24	28	2.00
2819800--2819847	19	2.4	21	80	13	57	29	10	6	54	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2820991--2821030	21	1.9	21	85	10	55	10	10	37	42	1.72
2821143--2821215	20	3.7	20	92	0	119	32	21	28	16	1.95
2821236--2821334	21	4.8	20	82	13	119	21	19	36	23	1.95
2821414--2821471	30	2.0	29	90	10	91	44	17	5	32	1.70
2821414--2821473	29	2.0	30	93	6	104	43	16	6	33	1.74
2822783--2823002	121	1.8	119	95	0	323	39	9	5	45	1.59
2830751--2830787	11	3.5	11	92	7	60	0	10	8	81	0.89
2840028--2840145	35	3.4	35	78	2	103	33	16	22	26	1.96
2841321--2841369	14	3.8	14	69	20	52	42	0	0	57	0.99
2841385--2841446	19	3.3	19	78	15	58	37	1	0	61	1.06
2842060--2842119	31	1.9	31	86	6	86	43	10	5	41	1.60
2843599--2843654	6	9.8	6	77	14	57	16	0	3	80	0.85
2843800--2843848	9	5.4	9	80	7	55	16	6	2	75	1.09
2843974--2844011	4	10.0	4	83	11	53	21	0	2	76	0.91
2843978--2844011	15	2.3	15	94	0	59	20	0	2	76	0.92
2844788--2844826	2	19.5	2	100	0	78	51	0	0	48	1.00
2846372--2846399	2	14.0	2	100	0	56	0	50	0	50	1.00
2847935--2847964	2	15.5	2	93	6	53	50	0	0	50	1.00
2848814--2848851	20	1.9	20	100	0	76	18	21	31	28	1.97
2851008--2851041	18	1.9	17	88	5	50	23	5	17	52	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!