genome.fa.s8460.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008460.1 Hibiscus syriacus cultivar Beakdansim tig00111273_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2854393

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  14  of  15  ( 1744 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2495010--2495052	3	14.0	3	95	4	77	32	0	0	67	0.91
2495868--2495900	17	1.9	17	88	11	50	60	0	33	6	1.21
2496644--2496680	18	2.1	19	85	10	51	45	0	0	54	1.00
2497014--2497048	2	18.5	2	88	11	56	48	0	0	51	1.00
2502393--2502419	13	2.1	13	100	0	54	40	0	22	37	1.54
2503653--2503710	28	2.1	28	100	0	116	46	10	17	25	1.79
2508244--2508278	18	1.9	18	88	0	52	60	5	0	34	1.21
2530324--2530406	31	2.7	31	94	0	139	19	18	24	38	1.93
2532468--2532608	69	2.0	69	83	2	176	42	14	12	30	1.83
2532544--2533021	83	5.8	83	84	5	592	33	16	19	30	1.94
2532544--2533024	165	2.9	163	82	5	583	33	17	18	30	1.94
2532568--2533024	248	1.8	248	89	2	722	33	17	18	29	1.94
2535199--2535288	42	2.1	42	83	0	108	28	16	26	27	1.97
2536923--2536992	19	3.7	19	70	12	54	54	4	1	40	1.29
2537125--2537202	38	2.1	37	83	11	97	65	2	0	32	1.06
2537160--2537204	15	3.1	15	90	9	67	66	0	0	33	0.92
2538405--2538447	16	2.9	15	82	6	52	16	6	4	72	1.24
2538692--2538796	37	2.8	37	85	0	138	41	14	14	29	1.85
2539161--2539194	18	1.9	17	88	5	50	20	5	2	70	1.21
2540151--2540341	20	9.6	20	79	7	201	34	26	19	19	1.96
2540151--2540341	59	3.2	60	81	3	233	34	26	19	19	1.96
2540150--2540299	79	1.9	79	86	2	212	33	26	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2540717--2540787	33	2.2	33	92	0	115	11	22	18	47	1.80
2540908--2540961	14	3.6	14	77	18	63	40	24	25	9	1.85
2540918--2540966	16	3.1	16	72	21	57	44	22	24	8	1.79
2540973--2541070	19	5.7	19	70	22	81	10	24	22	42	1.84
2540995--2541084	14	5.7	14	74	23	81	8	25	23	42	1.83
2540978--2541092	33	3.5	33	95	0	212	9	24	20	45	1.81
2542429--2542541	55	2.0	57	96	3	212	23	39	15	21	1.91
2542836--2543376	91	5.9	92	96	3	976	21	13	19	45	1.84
2542836--2543376	183	3.0	184	95	4	983	21	13	19	45	1.84
2543420--2543545	14	7.3	19	72	19	82	44	29	17	8	1.79
2543454--2543545	31	2.9	31	85	11	123	44	29	18	7	1.77
2543420--2543545	50	2.5	51	73	15	127	44	29	17	8	1.79
2543541--2543674	19	7.6	19	73	18	110	11	18	23	45	1.83
2543563--2543618	14	3.7	14	76	17	58	10	21	23	44	1.83
2543546--2543637	32	2.8	33	90	3	150	11	19	21	46	1.82
2545636--2545737	19	5.6	19	84	13	151	44	17	23	14	1.86
2545766--2546070	19	17.4	19	79	16	365	14	20	18	46	1.83
2545744--2546070	52	6.3	55	88	8	321	14	21	18	46	1.84
2545766--2546004	71	3.4	71	85	11	364	14	20	17	46	1.83
2549235--2549603	20	18.5	20	85	4	440	19	18	26	35	1.95
2551090--2551128	18	2.2	18	95	4	71	33	0	2	64	1.08
2562024--2562093	31	2.3	31	97	0	131	55	2	28	12	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2565556--2565588	17	2.0	17	88	5	50	33	42	3	21	1.68
2578561--2578615	25	2.2	25	100	0	110	49	5	23	21	1.70
2580822--2580898	25	3.0	25	83	14	79	38	5	1	54	1.31
2580841--2580898	27	2.3	27	85	14	79	37	5	0	56	1.21
2583741--2583775	18	2.1	16	89	10	52	28	0	0	71	0.86
2584474--2584532	26	2.3	26	90	0	100	49	23	6	20	1.73
2588966--2589324	179	2.0	179	100	0	718	38	21	15	25	1.92
2589533--2589568	19	1.9	18	88	5	54	58	5	22	13	1.56
2590985--2591067	32	2.6	31	81	7	103	42	36	8	13	1.74
2591749--2591807	29	2.1	28	85	11	86	22	18	18	40	1.91
2595052--2595089	20	1.9	20	84	10	51	31	5	5	57	1.43
2595554--2595598	2	22.5	2	100	0	90	51	0	0	48	1.00
2596684--2596722	21	1.9	20	84	5	51	58	0	2	38	1.12
2600330--2600357	2	14.0	2	100	0	56	50	0	0	50	1.00
2606506--2606537	2	16.0	2	100	0	64	50	0	0	50	1.00
2606526--2606630	47	2.2	48	76	5	106	45	0	6	46	1.35
2607863--2607909	2	23.5	2	100	0	94	51	0	0	48	1.00
2609120--2609444	164	2.0	164	95	0	587	40	13	16	30	1.86
2609281--2610621	182	7.4	182	92	1	2149	42	12	16	28	1.84
2611175--2611236	27	2.3	27	97	0	115	43	14	3	38	1.62
2611918--2612007	31	2.8	31	83	9	119	31	24	13	31	1.93
2611862--2612006	30	4.7	30	79	8	130	28	24	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2621244--2621280	13	2.8	13	100	0	74	40	0	13	45	1.43
2621728--2621779	25	2.0	27	82	14	65	46	1	23	28	1.63
2621843--2621913	18	3.8	18	86	5	88	15	21	32	30	1.94
2639697--2639744	19	2.3	22	86	13	66	45	14	0	39	1.45
2639879--2639938	23	2.6	23	76	10	68	31	25	25	18	1.97
2641513--2641571	20	2.7	22	84	7	77	27	25	18	28	1.98
2643646--2643851	29	7.1	29	91	4	305	48	19	1	29	1.60
2643646--2643851	57	3.6	58	88	5	310	48	19	1	29	1.60
2643860--2643889	13	2.3	13	100	0	60	20	23	40	16	1.91
2643873--2643919	23	2.0	23	84	8	60	12	19	51	17	1.77
2643912--2643955	19	2.3	20	84	7	56	20	29	36	13	1.91
2644614--2644685	29	2.4	32	86	9	98	37	19	2	40	1.66
2647859--2647890	13	2.5	13	94	0	55	25	18	31	25	1.98
2649453--2649477	11	2.3	11	100	0	50	60	16	0	24	1.36
2650959--2651090	57	2.3	58	85	7	171	49	15	3	31	1.60
2650962--2651102	29	5.0	27	76	19	121	50	16	2	30	1.59
2651106--2651142	18	2.1	18	100	0	74	10	21	51	16	1.74
2651799--2651859	29	2.1	29	87	6	88	37	14	3	44	1.62
2653193--2653283	40	2.2	40	82	7	103	37	16	20	25	1.93
2653446--2653533	40	2.2	39	84	9	108	30	20	12	36	1.90
2655619--2655993	187	2.0	187	100	0	750	29	20	14	35	1.92
2661748--2661788	8	5.2	8	82	5	57	34	0	29	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2661859--2662354	128	3.9	128	94	1	858	24	24	18	32	1.97
2662380--2662423	21	2.1	21	100	0	88	31	18	9	40	1.81
2662724--2662820	33	2.9	34	85	3	142	39	4	4	52	1.40
2663332--2663446	21	5.5	21	90	4	153	20	26	33	19	1.96
2663450--2663497	21	2.3	21	85	0	60	22	12	39	25	1.89
2666375--2666542	88	1.9	88	82	4	214	45	8	16	28	1.77
2667384--2667447	19	3.2	20	72	14	53	43	1	1	53	1.19
2667393--2667442	20	2.5	20	78	12	59	40	2	2	56	1.22
2667360--2667446	31	2.8	30	79	10	95	41	1	3	54	1.25
2667556--2667616	31	2.0	31	83	6	79	54	3	1	40	1.27
2667815--2667847	17	1.9	17	100	0	66	21	6	6	66	1.35
2675734--2675779	23	2.0	23	95	0	83	30	17	19	32	1.95
2683904--2683944	21	2.0	21	95	4	75	51	14	14	19	1.77
2688355--2688393	18	2.2	18	86	9	53	38	5	0	56	1.22
2689913--2689960	24	2.0	24	92	8	80	22	10	4	62	1.44
2689921--2689976	24	2.3	24	87	6	78	25	12	5	57	1.56
2689921--2690009	24	3.8	24	79	8	76	22	11	6	59	1.55
2691239--2691336	50	2.0	50	100	0	196	46	8	22	22	1.77
2697262--2697295	17	1.9	18	94	5	61	35	8	17	38	1.81
2706668--2708135	486	3.0	486	98	0	2810	28	14	16	40	1.88
2709320--2709366	21	2.2	21	100	0	94	31	14	19	34	1.92
2715511--2715551	21	2.0	21	90	0	64	48	9	24	17	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2717552--2717593	18	2.4	17	84	7	57	54	16	14	14	1.71
2718097--2718188	47	2.0	47	91	0	148	30	7	30	31	1.85
2719760--2719784	13	1.9	13	100	0	50	40	0	16	44	1.47
2720187--2720253	34	2.0	34	82	5	82	38	7	7	46	1.60
2720347--2720396	20	2.6	20	77	22	54	24	20	4	52	1.63
2723841--2723878	15	2.4	16	82	4	51	26	5	7	60	1.46
2723990--2724340	174	2.0	174	100	0	702	43	9	16	30	1.80
2727659--2727697	17	2.2	18	86	4	53	7	17	7	66	1.40
2727963--2728012	26	1.9	26	95	0	91	34	20	24	22	1.97
2732817--2732859	20	2.2	20	87	8	61	39	2	0	58	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15